Lonchura striata (white-rumped munia): 110469354
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Entry
110469354 CDS
T05897
Symbol
PTPRF
Name
(RefSeq) receptor-type tyrosine-protein phosphatase F isoform X1
KO
K05695
receptor-type tyrosine-protein phosphatase F [EC:
3.1.3.48
]
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr04514
Cell adhesion molecules
lsr04520
Adherens junction
lsr04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
110469354 (PTPRF)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
110469354 (PTPRF)
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
110469354 (PTPRF)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lsr01009
]
110469354 (PTPRF)
Enzymes [BR:
lsr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
110469354 (PTPRF)
Protein phosphatases and associated proteins [BR:
lsr01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
110469354 (PTPRF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Y_phosphatase
fn3
I-set
Ig_3
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Ig_2
ig
fn3_2
Interfer-bind
PTP-SAK
Tc-R-P
DSPc
Y_phosphatase3
V-set
C2-set_2
PTPlike_phytase
PTP-NADK
Ig_C17orf99
Fn3_PTPRU
Insulin_TMD
DUF3377
ICAM_N
TMEM154
Motif
Other DBs
NCBI-GeneID:
110469354
NCBI-ProteinID:
XP_021383665
LinkDB
All DBs
Position
8:20096693..20472496
Genome browser
AA seq
1922 aa
AA seq
DB search
MVPNFCIQVLTVPAAILCCLMLPLAGADSKPTFMKAPEDQIGISGGVASFVCQATGEPKP
RITWMKKGKKVSSQRFEVIEFDDGSGSVLRIQPLRVHRDEAIYECTATNSVGEINTSAKL
TVLEEDHLPAGFPTIDMGPQLKVVEKARTATMLCAASGNPDPEISWFKDFLPVDTATSNG
RIKQLRSGGTPIRGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSI
PPSNHEVMPGGSVNLTCVAVGAPMPYVKWMAGVEELTKEDEMPVGRNVLELNNIMQSANY
TCVAISSLGMIEATAQITVKALPKPPTEPLVTETTATSVTLTWDSGNSDPISYYVIQYKP
KSLEGQFQEVDGVATTRYSIGGLSPFSEYEFRVIAVNNIGRGPPSELVEARTGEQAPSSP
PLKVQARMLSASTMLVQWEQPEEPNGQIRGYRVYYTTDPHLPLSMWQKHNTDDSHLTTVG
SLITGTTYSIRVLAFTSVGDGPPSDIIQVKTQQGVPAQPADFQAEAESDTRILLTWLPAS
QERITKYELLYWEGEDGTQQKVEFDPTSSYAVEGLKPDTLYKFRLGARSELGVGVYTPTV
EARTAQSTPSAPPQEVECVSTSSTTIRVSWVPPPAQSRNGVITQYSIAYQAVEGDDNTKH
VVDGIGREHSSWEIKDLEKWTEYKVWVRAHTDVGPGPESIPVHVRTDEDVPSAPPRKVEV
ESVNSTAIRVSWKLPISNKQHGQIRGYQVTYVKLENNEPRGQPVIKDVMLSEAQWRAEDS
VDHETVIGGLLPETTYSVTVAAYTTKGDGARSKPKVITTTGAVPGKPTMMISTTAMNTAL
IQWHPPKEMVGELLGYRLQYRRLDEEKMNTIDFGKRDHHYTVTNLHKGATYLFKLSAKNR
AGPGEEFEKEITTAEDVPSGFPQNLRVVGLTTSTTEVAWEPPVLAERNGKIVNYTVVYRD
INSQQDLANITKDTSITLTNLKPDTTYDIKVRARTNKGAGPLSPSIQSRTMPVEQVFAKN
FRVNAVMKTSVLLSWEVPDSYKSAVPFKILYNSQSVEVDGHSMKKLISDLQPDTDYSFVL
MNRGSSAGGLQHLVSIRTAPDVLQSKPIATNKYIQEGKFTLTLPKVQTTVPVRWYYIVVV
PADQSTSTLTARWRTPDEMELDQLLEAISQGSQSRRQRRQADRLKPYIAAQVDVLPETFT
LGDEKNYKGFYNKPLSQDLSYRCFVLASLEDGDTKRYAASPYSDEIVMEVASAKQQDEPE
MLWVMGPVLAVILIIIIVIAILLFKSKQERKRAHSPSSKDEHSIGLKDSLLAHSSDPVEM
RRLNYQTPGASVPCCPNISSMRDHPPIPVTDLADNIDRLKANDGLKFSQEYESIDPGQQF
TWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPGSDYINANYIDGYRKQNAYIATQG
PLPETLSDFWRMVWEQRTATIVMMTRLEEKSRVKCDQYWPSRGTETYGMIQVVLLDTVEL
ATYTVRTFALYKNGSNEKTELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPTDAGPMV
VHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYIFIHEALL
EAATCGNTEVPARNLFAHIQKLTQVPPGESVTEMELEFKMLANSKAHTSRFISANLPCNK
FKNRLVNIMPYELTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWR
MLWEHDSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVT
DARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGR
TGVFITLSIVLERMRYEGVVDMFQMVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSFDHY
AT
NT seq
5769 nt
NT seq
+upstream
nt +downstream
nt
atggtgcctaacttctgcatccaagtactcactgtgccagcagccatcctctgctgcttg
atgctgcctttagcaggagcggacagcaagccaacgtttatgaaggctcctgaagatcag
attgggatttctggaggagtggcctcttttgtgtgtcaggcaacaggagagcccaaacct
cgtatcacgtggatgaagaaggggaagaaagtcagttctcagcggtttgaggttatcgag
tttgatgatggatcaggatcagttctgaggatacagcccctgcgtgtccatcgagatgag
gctatctatgagtgcacagccaccaacagtgtgggggagataaacaccagtgccaagtta
acagtgttagaagaagaccatctcccagctggcttcccaaccattgacatgggcccgcag
ctgaaggtggtggaaaaggcccgcacagccacgatgctctgtgctgccagtggtaaccct
gatcccgaaatctcctggttcaaggacttcctgcccgtggacactgccaccagcaatggg
cgaatcaagcaactccgctcgggtggtacaccgatcagaggagctctgcaaatagagaac
agtgaggagtcagaccaaggcaaatacgaatgtgttgcaaccaacagcgcaggaacccgc
tactctgccccagccaacctttatgttcgagtgcggcgtgttgctcctcgattctcgatc
cctccgagcaaccacgaggtgatgcctggggggagcgtgaacctcacgtgcgtggcagta
ggtgctccaatgccctatgtgaagtggatggctggtgtggaggaactgaccaaagaagat
gagatgcccgtcggtaggaatgtcctggagctgaataacatcatgcagtctgccaactac
acctgcgtggccatctcttcccttggcatgatcgaagccacagcccagatcactgtcaaa
gcactgccaaaacctccaacagagccattagtgactgaaacaacagctaccagcgtgacc
ctcacctgggattcaggcaactctgaccccatttcatattacgtcatccagtacaagccc
aaatccctggagggccagttccaggaggtggatggtgtggcaacaacccgctatagcata
ggtgggctcagccccttctcagagtacgagttccgggtcatcgcagtcaacaacattggc
aggggtccccccagtgagctggtggaggcccggacaggagagcaagctccttcaagtcca
cccctcaaagtccaggcacggatgctgagtgccagcaccatgctggtccagtgggagcag
ccggaggagcccaatggacagatccgagggtaccgcgtgtactacaccaccgacccgcac
ctgcctttgagcatgtggcagaaacacaacacagacgacagccacctcaccaccgtgggc
agcctcatcacaggcaccacctacagcatccgcgtcctggccttcacctcggtgggcgac
gggcccccctcggacatcatccaggtcaaaacacagcaaggggttcctgcccagccagct
gacttccaggcagaagcagagtctgatacccgcatcctgttgacatggctgcctgcctct
caggaacgcattactaaatatgagctgctgtactgggaaggagaggatggcactcagcaa
aaggtggagtttgacccaacctcctcatatgccgtggaaggtctcaaaccagacacactg
tataagttccgtctgggcgcccgatcagagctgggggtaggagtttacacccccacggtg
gaagccagaactgcccaatccaccccctccgccccaccccaagaagtcgagtgtgtaagc
accagctccaccaccatccgggtaagttgggtgccaccgcccgcccagagccgcaatggg
gtcatcacccagtactccattgcctaccaggcagtggaaggagatgacaacaccaagcat
gtggtggatggcattggacgggagcattccagctgggagatcaaggacctggagaaatgg
acagaatacaaggtgtgggtaagggctcacaccgatgtggggccaggaccagagagcatc
cccgtgcacgtgcgcactgacgaggatgtgcccagtgccccaccgcgaaaggtggaggtg
gagtctgtgaattcgactgccatccgggtgagctggaagctgcccatctccaacaagcag
catgggcagatccgcgggtatcaggttacctacgttaagctggaaaacaacgagccccga
gggcagccagtgatcaaggacgtcatgctgtcagaagcacagtggagagctgaggactcc
gtcgaccatgagacagtcattggaggcctgctgccagaaaccacctactccgtcacagtt
gctgcctacaccaccaaaggagatggtgcccgcagcaagcccaaagtcatcaccaccaca
ggggcagtcccggggaagcccaccatgatgattagcacgacagccatgaacacagccctc
atccagtggcacccacccaaggagatggtaggggagctgctgggttaccggctgcagtac
agacgtctggatgaggaaaaaatgaacacgatagacttcgggaagagagaccatcactac
acagtgaccaacctgcacaagggggccacgtacctcttcaagttgtctgccaagaacaga
gccggcccaggagaggagtttgagaaggagatcacaactgccgaagatgtgccaagcggc
ttcccacagaacctgcgtgtggtgggtctcaccacttccaccacagaagttgcttgggag
cccccagttttggcagaaaggaatggcaagattgtcaactacacagtggtatacagggac
ataaacagccagcaggatctggctaacatcaccaaggacacgagtatcactttgacaaat
ttgaaacctgataccacttacgacatcaaagtgagggctcgcaccaataagggggctggg
ccactcagccccagcatccagtcccggaccatgcctgtagagcaagtgtttgctaagaac
ttccgtgtcaatgctgtcatgaaaacatctgtgttgctgagctgggaagtgcctgactcc
tataaatctgcagtgccttttaagattctgtacaatagccagagtgtggaggtggatggc
cactcaatgaagaagctcataagtgacctccagccagacacggactattcttttgtgcta
atgaaccgtgggagcagcgcaggggggctccagcacctcgtctcaatccgcactgctcct
gatgtcttgcaaagcaaacccatcgccacaaacaagtacatacaggaaggaaaattcaca
ctaactcttcccaaagtgcagaccactgtgcctgttcggtggtactacatcgtggttgtg
ccagcagaccagagcaccagcaccctgactgctcggtggcggacacctgatgagatggag
ctggaccagctgctggaggccataagccaggggagtcagagcaggcggcagcgacgccag
gcagacagactcaagccctacattgctgctcaagtggatgtgctgcctgagaccttcacc
ctgggggatgagaagaactacaaaggtttctacaacaagcctctgtctcaagatctgagc
tatcgctgcttcgtgctggcctcgctggaggatggggacacgaagagatatgcagccagc
ccctactcggatgagatcgtgatggaagtggcatcagcaaagcagcaggatgaaccagag
atgctgtgggtgatgggacctgtcctggctgtgatattaatcatcatcattgtcattgcc
atacttctcttcaaaagtaagcaagaaaggaaaagggcacattccccctcttccaaggat
gagcactccattggcctgaaggactcactcttggcccactcatctgacccagtggagatg
aggcgactcaactaccagactccaggtgccagtgtcccctgttgcccgaatatctcaagc
atgcgtgaccacccccccatccccgtgaccgacctcgctgacaacatcgaccggctcaag
gccaacgatgggctgaagttctcccaggagtacgagtccattgatcctgggcagcagttc
acctgggagaactccaacctggaagtgaataaacctaaaaaccgctatgcaaatgtgata
gcctacgaccactcacgtgtcatcctgacttccatcgatggggtcccaggcagtgattac
atcaatgccaattacatcgatgggtatcggaagcagaacgcctacatcgccacgcaggga
ccgctgccagaaaccctcagcgacttctggaggatggtgtgggaacagagaacagcaact
atagtcatgatgaccaggctggaggagaagtccagggtaaagtgtgaccagtactggccg
agccggggtacagaaacctatgggatgatccaggtggtcctgctggacacagtcgagctg
gcgacctacaccgtccgcacctttgcgctgtacaagaatggctccaatgagaagacagag
ctgagacagttccagttcatggcttggcctgatcacggggtcccagaataccccacccca
atcctcgctttcctgcgacgggtcaaggcctgtaacccaacagatgctgggcccatggtt
gtgcattgcagtgctggcgtgggccgaaccggctgcttcattgtcatcgacgccatgctg
gagcggatgaagcacgagaagaccgtggacatctacggccacgtgacgtgcatgcgctcc
cagcgcaactacatggtgcagacagaggaccagtacatcttcatccacgaggccttgctg
gaggccgccacgtgcggcaataccgaggtgcccgcgcgcaacctcttcgcccacatccag
aagctgacccaggtgccaccaggcgagagcgttactgaaatggagctggaattcaagatg
ctggccaattctaaagcacatacctcacgtttcatcagtgccaacctcccatgcaacaaa
ttcaagaaccgcctcgtgaacatcatgccgtatgagctgacaagagtctgcctgcagccc
atccggggtgtcgagggctctgattacatcaatgccagcttcatagacggctacaggcag
cagaaggcctacatcgccacgcagggaccactggccgagaccacggaggatttctggcgg
atgctctgggagcacgactccaccattgtggtgatgttgacaaagctgcgtgagatgggc
cgggagaagtgccatcagtactggcctgcagagcgctctgcccggtaccagtactttgtg
gtggaccccatggcagagtacaacatgccacagtacatcctccgggagttcaaggtgacg
gatgccagggacggccagtcacggaccatccgccagttccagttcacagactggcctgag
cagggagtgccaaagacaggagagggtttcatcgacttcattgggcaggtgcacaagacc
aaggagcagttcggacaggatgggcccatcacagtgcactgcagtgctggggttgggcgc
actggcgtgttcatcacactcagcattgtgctggagaggatgcgctacgagggcgtggtg
gacatgttccagatggtgaagaccttgcggacacagcgaccagccatggtgcagacagag
gaccagtaccagctgtgctacagagccgcactggagtaccttggcagcttcgaccactat
gcaacgtaa
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integrated database retrieval system
