Lonchura striata (white-rumped munia): 110471756
Help
Entry
110471756 CDS
T05897
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
110471756 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lsr03000
]
110471756 (KDM2B)
04121 Ubiquitin system [BR:
lsr04121
]
110471756 (KDM2B)
03036 Chromosome and associated proteins [BR:
lsr03036
]
110471756 (KDM2B)
Enzymes [BR:
lsr01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
110471756 (KDM2B)
Transcription factors [BR:
lsr03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
110471756 (KDM2B)
Ubiquitin system [BR:
lsr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
110471756 (KDM2B)
Chromosome and associated proteins [BR:
lsr03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
110471756 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
110471756 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_At5g56370
LRR_4
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
110471756
NCBI-ProteinID:
XP_021388384
LinkDB
All DBs
Position
15:11370144..11476601
Genome browser
AA seq
1276 aa
AA seq
DB search
MEKRCIGRRRYDENEDLSDVEEIVSIRSFNLEEKLKSKMYHGDFVHAMDGKDFTFEYVQR
EALRVPLIFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNTQRGVEMSMSQFVRY
YETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQHLKERQTDATNAIS
EMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLQNLELYEEWVL
SGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQL
RIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQKESMLIDAKRKRST
DSYSSDSWLDMDEESCDAHLQEEKDDSLDKNSKSLVDGSSSPNSTHSEGKEAAGRKQKAT
VMRYLKRTLSNESDDSIKSTTPTDYPKTPTGSPATEVSTKWTHLTEFELKGLKALVEKLE
SLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVSWPKKTTKNRAVGRP
KGKPGAASAVKLAANRSTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQS
CIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSICNEIIHPGCLKVKES
DGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLLKEQKMNRDNKEVPD
AAKRKGDCEETPRRKSEEHSKKAPVDSILRRKSDEVHLWRKRKFEKSQEPTMRKRRRSWK
APDDRTAMIKPLRRLKQEPEDELPEAPPRSKDSDQSRSSSPTAGPSTEGAEPRDKKKFKM
RRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSEPESENEEPKRALNNSERLH
RFSKGLNGTPRELRHHQLMPSLRSTPRGIARPPPSLSPPKCIQMERHVIRPPPISPPPDS
LPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWCCDKRLWTKIDLNHCKSIT
PLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLSGCSWIAVSALCSSSCPL
LRTLDVQWAEGLKDAQMRDLLSPPTDNRPGCNGCTLESMETLSSSSGKEQFCGSCHIRPD
FSSGQIDNRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLNLSYCNHVTDQSINLLT
AVGTTTRDSLTEINLSDCNKVTDQCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSV
SVQFGQVEEKLLQKLS
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagcgctgcatcggccgaaggcggtacgatgagaacgaggacctctcggacgtg
gaggaaattgtcagcatcaggagtttcaatttggaagagaaattaaagagtaaaatgtac
cacggggatttcgtgcatgccatggacggcaaagattttacttttgagtatgttcaaaga
gaagctctccgagttcccctcatcttcagaaataaggatggactgggaattaaaatgcct
gacccggatttcaccgttagagatgtgaagctattagtgggaagccgccggatcgtggat
gtgatggatgtgaacacacagaggggagttgagatgagcatgtctcagtttgtgaggtac
tacgagaccccagaggcccagcgggagaagctctacaacgtcatcagcctggagttcagt
cacaccaagctggagaacattgtcaagcgccccaacgtggtggacttagtcgactgggtg
gataatatgtggccacagcacttgaaggagagacagacagatgctaccaatgctatttca
gagatgaaataccccaaagtgaaaaagtactgtttgatgagtgtgaaaggatgcttcact
gattttcatattgattttggtggcacttcagtgtggtatcacgttttccgtggggggaag
atcttctggctgattccacctaccctgcagaatctagaactttatgaagaatgggttctc
tcaggaaagcaaagtgatatctttctgggagacagggtggaacgatgccaaagaattgag
ctgaaacaaggctacacgttcttcattccttcagggtggatacacgctgtttatactcca
gtagattctctggtgtttggtggaaatatcctgcatagctttaatgttcccatgcagctt
cgcatctatgaaattgaggacagaacaagggtgcacgccaaattccgctatcctttctac
tatgagatgtgctggtatgttctggagagatacgtgtcctgtgtgacccagcgctgccac
ctcagcaaagagtaccagaaagaatcaatgttaattgatgcaaaaagaaaacgcagcaca
gacagctactcatcagattcgtggttagacatggatgaagaatcttgtgatgcccatctc
caggaggagaaggatgacagcttggataagaactccaaatccttggtggatggctcctcc
tcacccaacagcacacactcagaagggaaggaggctgcagggaggaaacagaaagccaca
gtaatgaggtacctgaaaagaactttgtctaatgagtcagatgacagcataaaatcaacg
accccgacggactatcccaaaacacccacggggtctccagctacagaagtttcaaccaaa
tggactcacctcacagaatttgaactgaagggtttaaaagccctggtggaaaagcttgaa
tctctcccagagaacaagaagtgtgtcccagaaggcattgaagaccctcaggctctcctg
gaggacatgaagaacatactaaaggaacatgctgatgatgaccaaaatcttgccatttcg
ggtgtccctgtggtcagctggcccaagaagaccacaaagaacagggcggtcgggcggccc
aaggggaagccgggcgctgcctcggcggtgaagctcgcggccaaccggagcacggcgggc
gcgcggcggcggaggacgcgatgccgcaagtgcgaggcgtgtctgcggaccgagtgcggc
gagtgccacttctgcaaggacatgaagaagttcggggggcccggcaggatgaagcagtcc
tgcatcatgaggcagtgcatagctccggtgctgcctcatactgccgtgtgtctggtgtgt
ggagaggctgggaaagaggacactgtggaagaggaggagagcaagtttaatctcatgcta
atggaatgctccatttgtaatgaaatcatacacccaggatgccttaaggtgaaggaatcg
gatggtgtggttaacgatgagctgccgaactgctgggagtgtccaaagtgcaaccacgca
gggaaaactggaaaagcgtacaagcaaaagcgcggaccaggatttaaatacgcgtcaaat
ctcccgggctcgttgctgaaggagcagaaaatgaacagagacaacaaggaagtgccagat
gctgccaaaaggaaaggggactgcgaggagactcccaggcggaaatcagaggaacattcc
aaaaaggctccggttgactcaatcctgaggagaaagtctgacgaggtgcatctgtggagg
aagcggaaattcgagaagtcccaggagcccacgatgagaaagcggcggcgatcgtggaag
gccccggatgaccgaactgccatgatcaaacccctgcggcgcctcaagcaggagcccgag
gacgagctgccagaagcaccccccaggtccaaggacagcgaccagtctcggtccagctcg
cccacagcagggcccagcacggagggcgccgagcccagggacaagaagaagttcaagatg
aggaggaaaaggcggcttcccaataaggaactgagcaaggagctcagcaaagagcttaac
caggagatccaaaaaaccgagaacagccttgccaatgagaaccaccaacccatcaaatct
gaaccggagagcgagaacgaggaacccaagcgtgcgttgaacaacagcgagagactccat
aggttcagcaaagggttgaacgggactccccgggagctgaggcaccaccagctcatgccc
agcctgcgcagcaccccccggggaatagcccggcccccaccctcgctgtcgccccccaag
tgcatccagatggagcggcacgttatccggccacctcccatcagcccccctccggactcg
ctgcccctggatgacggggcagcccacgtgatgcagagggaagtctggatggctgtcttt
agctacctcagtcatagagacttgtgcatctgtatgagagtttgcaagacctggaacaga
tggtgctgtgacaaaagattatggaccaaaatagatttaaaccattgtaaatccatcact
ccacttatgcttagtggcattattaggagacagcctgtaacccttgatcttagctggaca
aatatatctaaaaagcagctgagttggcttatcaacagactaccaggtctgcgggacctg
ctgttatcagggtgctcatggatagcagtgtcggcactttgtagctccagctgtcccttg
ctgcgaactctggacgtgcagtgggcggaaggactgaaagacgcacaaatgagagacctc
ctgtccccgcccacggacaaccggccaggctgcaacgggtgtactttagagagtatggaa
acactttcttccagttcagggaaggagcagttctgtgggtcatgccacattcgcccggat
ttcagctcaggtcagatcgacaaccggagcaagctacggaacatcgtggagctgcgcctg
gccgggctggacatcacggatgcctcgctgcggctgatcatcaggcacatgcccctgctc
tccaaactcaatctcagttactgtaaccacgtgacagatcagtctattaacctgctgacc
gccgtcgggaccaccacgcgggattcgttaacggaaattaatttatcagactgcaataag
gtcactgaccagtgcctgtcttacttcaaacgttgtgggaacatctgccagatcgacctg
aggtactgcaagcaagtgacgaaggagggctgtgagcagttcatagcggaaatgtccgtg
agcgtccagttcgggcaggtggaagaaaaacttctgcaaaaactgagttag
DBGET
integrated database retrieval system
