Lonchura striata (white-rumped munia): 110471836
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Entry
110471836 CDS
T05897
Symbol
BRCA1
Name
(RefSeq) breast cancer type 1 susceptibility protein
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03440
Homologous recombination
lsr03460
Fanconi anemia pathway
lsr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
110471836 (BRCA1)
09124 Replication and repair
03440 Homologous recombination
110471836 (BRCA1)
03460 Fanconi anemia pathway
110471836 (BRCA1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lsr01009
]
110471836 (BRCA1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsr04121
]
110471836 (BRCA1)
03036 Chromosome and associated proteins [BR:
lsr03036
]
110471836 (BRCA1)
03400 DNA repair and recombination proteins [BR:
lsr03400
]
110471836 (BRCA1)
Enzymes [BR:
lsr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110471836 (BRCA1)
Protein phosphatases and associated proteins [BR:
lsr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
110471836 (BRCA1)
Ubiquitin system [BR:
lsr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110471836 (BRCA1)
Multi subunit type E3
BRCC complex
110471836 (BRCA1)
Chromosome and associated proteins [BR:
lsr03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
110471836 (BRCA1)
DNA repair and recombination proteins [BR:
lsr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
110471836 (BRCA1)
BRCA1-A complex
110471836 (BRCA1)
BRCA1-B complex
110471836 (BRCA1)
BRCA1-C complex
110471836 (BRCA1)
BRCA complex
110471836 (BRCA1)
FA (Fanconi anemia) pathway
Downstream FA components
110471836 (BRCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_assoc
BRCT
zf-C3HC4
zf-C3HC4_4
BRCT_2
zf-C3HC4_2
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
RING_XB3-XBAT31
zf-Nse
BRCT_3
zf-RING_6
zf-RING_5
OKR_DC_1
RTT107_BRCT_5
TRAF3_RING
zf-RING_4
zf-ANAPC11
Zf_2nd_IFT121
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
110471836
NCBI-ProteinID:
XP_031362927
LinkDB
All DBs
Position
27:complement(3748681..3767279)
Genome browser
AA seq
1806 aa
AA seq
DB search
MDFSAITIGQVQNVLSAMQKNLECPICLDVVQEPVSTKCDHTFCRFCMFKLINKKKKGVI
ECPLCKTEVTKRSLKENSRFKQLIEGLLEAIHAFELDTGVKFLKNRHFPKTSTEATAESL
SKESSVIQSKGFRNRRKSAKGNGQENFTLQEASVNIHLTDGKMCRPRNKPQKSDSQKGIY
IEFGSESSEEFFKQASKTGFEDKGTVQSSSQVRLEELESAEKGNENSCNAQPDKLCAKEI
TLPDIIGESDFSKEYLSKKSTRSITECAKADQVNVTECQSSPLKVLAADLLPEQCDRTGD
ASPTVNEDTSFFKNIEEMEEQQAQYSSENQEFDLEDSSESRLDKSKDMDTDVQSVEAVEG
YEPEPENDSSYDKEHPLEELPQPETFHSATLNKVSKKRLKQSIQKVNEWFSKSNEVLSSS
SSADESAASADVSGEGDLCSSDKESSISAKTDPVADSMGIAAVERKKRWSKQTAENIKDK
IFGKTYKRERKSNPPSTLRDILPTRQKEDVSADKCLNDFSKDRLKRKRKTACVLQPEDFT
KEKDTEEADGGPQSVNGGLGEAEKKRSDESVSVNESHLSQNRANNALTEPEEGGESTWKK
GTEKVTTKHCDGEPEMYNCDQKSSKKRSSAAKRCRHFSRTMCALQLVVDRGSVFPDAAEP
QIDSYPSSGEPRQADSEQNPVRRSRRLQLLSEEITKGTRKGVKGARKTNSGRGRSVSGDQ
RNVATQSAECQDLCEPQDELSYRPVTNKEGGDLEANEMQVTLKNLSHTEETGKSLFRPSC
LPSNCGSTVPDTDSQDSKILGSPLLLQLPSMSAKQTASHQTEEGTESPTAFPPECGHDSQ
NVPGDFKTEKLPMAKNVLELTKEAEDSDLDTQYLRNIFRHSKRSSVSLFQAPRQARAVED
PPSETRNLSCAAQVENKASKQLQTEILQEERTAAQNLSRLSEKEKLKPCESACVDPVPCF
AVSTGEHRDGISQAAEERALTPARTGTAQTEHKNGLLQQEQVNEKLVSDEIGIESELRQN
PIESDGSQSDQSNTEKQDSRQNDLNTGQENSFSSGSNQAGKTEVVDCTEPILCFQSTSTI
CSATCQQSPAEFSCEVTRTKSSKRERKRVKGNEEEAAQTVSTAVEALEEPVRENHDLTGL
SETPNALQCSDTDIEENTSLCETDRKEQSAVFVKSDNALGKELHKRNGSSKPRSRGTRKS
RRQVQKLPSSDEESCEDEDLPCFRTLIFSKSASTPLQTDKQMASVVESPVAECPASPNVL
PHSVSNDGNIVQKVPEAALSNVCASPSQESECSVNLFSSQSNMSEESLNGAQELNKHLPQ
AHESKQMSSINDSKETSQNSSAGLKETKDECQGVPDIGAKLGEASGYDSEISLVEDSCGP
FSQGEILTTQQKNAMQNSLKKLQQEMAALEAVLKQNGSQNCEVLPVHRELPHSSTEGAFE
MDQMRKKNNRSPELLLSSSKSSSTKKSDLEKGPECDSVLKNKTPSEKTKPVQEAVQEHGQ
YQLGTENAEEQKSGTRQNSASVSSDLFGNESPENSSSSVRLFTPQTAEATAGPVLAQNTD
KSCGPGQTLKRSECFPAPVLHNATGKENTTNPVVTKRKKMSIVVSGLNHSEHLVVQKFVK
KTQSTLSNHITEGTTHVIMKTDEELVCERTLKYFLGIAGGKWVVSYQWIIQSFKEGRILD
EEKFEVRGDVINGRNHQGPKRARQALTGKIFKDFEICCCGPFTDMTTEHLEWMVELCGAS
VVKQPDLFTPTANSAAVVVVQPDAWKKNVDYRAMQQQSSVAVVTREWVLDSVACYQCQEL
SAYLVS
NT seq
5421 nt
NT seq
+upstream
nt +downstream
nt
atggacttctcagcaattactattggacaagtacaaaatgtgctttcagctatgcagaag
aatttggagtgcccaatatgcctggatgtggtacaagagcctgtttcaacaaaatgtgat
cacacattctgcaggttctgcatgttcaaacttataaacaaaaagaaaaaaggtgtgata
gaatgtcctctgtgcaagactgaagttaccaagagaagtctgaaagaaaattccagattt
aagcaactaattgaaggactgttggaagctattcatgcttttgagcttgacactggagtg
aagtttttaaagaatcgtcactttcctaagacatccacagaagccactgctgagtccctg
agtaaagaaagttctgtcatccaaagcaagggcttcagaaacaggagaaaaagtgctaaa
ggaaatggacaagaaaacttcaccttgcaggaagctagtgtgaatattcaccttacagat
ggcaaaatgtgtcgcccaagaaacaaaccccagaaatctgactctcaaaagggtatttat
atagagtttggctctgaatcatctgaagagttttttaaacaggcaagcaaaactgggttt
gaagacaagggaacagttcagagttcttctcaagtaaggctggaagaacttgagagtgct
gagaaaggaaatgaaaattcttgtaatgcacagcctgacaagttgtgtgccaaagaaata
acactaccagacatcataggtgaaagtgatttctcaaaggaatatttgagcaaaaaaagc
actcggagcatcactgaatgtgccaaagctgaccaagtgaatgtgactgaatgccagagt
tctcctttgaaggttcttgctgcagacctgctcccagagcagtgtgacagaacaggtgat
gccagtcccacagtgaatgaggacacatcattctttaagaacatagaagaaatggaggaa
cagcaagcccagtatagcagtgaaaaccaagagtttgatttagaagatagctcagagagc
aggctggataaaagcaaggacatggatactgatgtgcaaagtgtagaagctgtagaggga
tatgaacctgaacctgaaaatgactcttcctatgacaaagaacatcctctggaggagcta
cctcagccagagacatttcactctgccaccctgaataaagtctccaagaagagactgaag
cagagcattcagaaagtcaacgaatggttttcaaaaagcaatgaggttttgtcttccagt
tcttcagcggatgaatctgctgcatcagctgatgtttcaggtgaaggagacctgtgttca
tcagataaagagtccagtatttcagcaaagactgaccctgtggcagattccatgggaatt
gcagcagtggaaagaaaaaagaggtggtcaaaacaaacagcagaaaacatcaaagacaaa
atatttggaaaaacatacaagagagagaggaaatcaaatcccccttctaccttgagagat
attttgcctactaggcaaaaggaagatgtgtcggctgataagtgcctgaatgatttcagc
aaagacagactcaaaagaaagaggaaaactgcctgtgtcctgcaacctgaggatttcacc
aaggaaaaggatacagaagaggcagatgggggccctcagagtgttaatgggggccttgga
gaagctgaaaagaaaagaagtgatgaaagtgtttctgttaatgagagtcacctctctcag
aatagagcaaataatgcattaacagaacctgaggaaggaggagagtccacatggaagaaa
ggtactgagaaggtcactaccaagcactgtgatggggaaccagaaatgtataactgtgat
cagaaaagcagcaaaaaaagaagttctgcagcaaaaagatgcaggcattttagtagaact
atgtgtgctctacagttagtagtggacagaggctctgttttccctgatgcagctgagcca
cagattgacagctacccaagcagtggagagcccaggcaagctgattctgagcaaaatcca
gtcagacgcagcagaaggcttcagttactctctgaagaaataacaaaaggaacaaggaaa
ggagtaaagggagcaagaaaaactaacagtggtcgtgggaggtctgtctctggagaccaa
aggaatgtggcaactcagtctgctgaatgccaagacctgtgtgagcctcaagatgagttg
agttacaggccagtcactaataaggagggaggtgatctggaagcaaatgagatgcaggtt
actctaaagaatttatctcacactgaagaaactggaaaaagtctgttcagaccttcatgc
ctgccttcaaactgtggttccactgtgcctgatacagattctcaagacagtaaaattcta
ggtagccccctcctcctacaacttccttcaatgtctgctaagcaaactgcttctcaccag
actgaagaggggactgaatcacctactgcatttcccccggaatgtgggcatgattcacaa
aatgttccaggggacttcaaaactgaaaagttgccaatggctaaaaatgttttggaattg
actaaggaagctgaagacagtgatttggacacccagtacctgcggaatatatttcggcat
tcaaagcgctcatccgtcagcctttttcaggctcccaggcaggcacgtgcagtggaagat
cctccttctgaaacccgaaatctatcatgtgctgctcaggtagaaaataaggctagcaaa
caactacaaacagaaatcttgcaagaggagagaacagctgctcaaaacttgagcaggctt
tctgagaaagagaagcttaagccctgtgagtctgcatgtgtcgatcctgtgccttgcttt
gctgtcagcacaggagagcacagggatggcatttcacaggctgcagaggaacgggctctg
acaccagcaagaacagggactgctcagactgagcacaaaaatggattgctacaacaagag
caggtcaatgaaaagctagtgtcagatgagatagggatagaaagtgagttgagacagaat
cccattgaaagtgatggaagccaaagtgatcagagtaacacagagaagcaggattccaga
cagaatgatttaaacacaggccaggaaaacagcttcagttcaggaagcaatcaggcagga
aagactgaagttgttgattgcacagaaccaattctatgttttcaatccacatcaacgatt
tgttctgcaacctgtcagcaaagccctgctgaattcagctgtgaagtcactaggacaaaa
agtagcaaaagagaaagaaaacgtgtaaaagggaatgaagaagaagcagcccaaactgtt
agcacagctgtagaggctctggaagaacctgtcagagagaatcatgatcttacaggtttg
tcagaaacccctaatgccttacagtgctctgatactgacattgaggagaacaccagttta
tgtgaaactgataggaaagagcaatctgcagtgtttgtaaaaagtgacaatgctctggga
aaagaactgcacaagagaaatggaagctctaagccaagatctcgaggtactcggaagtct
cggagacaagtgcagaaactgccatcttcggatgaagagtcctgtgaggatgaggactta
ccatgctttaggacattaatcttcagcaaatcagcaagcacacctttgcagactgataaa
caaatggcatctgtggtcgagtctccagtggcagagtgtccagcgagcccaaatgtgctg
cctcacagtgtgagtaatgatggcaatatcgtgcagaaggtgcctgaagctgccctgagt
aatgtgtgtgcttcaccaagccaggagtcagaatgctctgtcaacttattttcttcccag
tccaacatgtctgaagaatcactcaatggagcacaagaactgaacaaacatttaccacaa
gctcatgagtccaaacaaatgagcagcataaatgacagtaaagaaacttctcagaattct
agtgcagggctgaaggaaaccaaagatgaatgccaaggagtcccagacataggagcaaag
ctaggtgaagcatctggatatgacagtgaaataagtcttgtagaagattcctgtggacca
ttctctcagggtgaaatcctcactacacagcaaaagaatgctatgcaaaatagcctgaaa
aaacttcagcaagaaatggctgcacttgaagcagtgctaaagcagaatggaagtcagaac
tgtgaagttttacctgtccacagggaactgccacattccagtactgaaggagcatttgaa
atggatcaaatgagaaaaaaaaataacaggtctccagaattgttgctttcatcttctaaa
tcctcttcaacaaagaaatcagatctggagaaaggccctgagtgtgacagtgttctaaag
aacaaaactccctctgaaaagacaaaacctgtgcaagaggcagtgcaagaacacgggcag
tatcagcttggaacagaaaatgcagaggagcagaaatctgggaccaggcaaaacagtgca
tctgtctcatcagatctttttggaaatgagagtccagaaaactcttcctcctctgtaagg
ctttttacccctcaaactgcagaagccacagctgggcctgttctggctcagaacactgat
aaaagctgtggcccagggcagacattgaagagaagtgaatgttttcctgcacctgttctg
cacaatgcaactgggaaagaaaatactacaaatccagtggtgaccaagaggaaaaaaatg
tcaattgtggtatcaggtctaaatcacagtgagcacttggtggtccagaagtttgtgaaa
aaaactcagagcactttatctaatcacattactgaaggaacaacccatgtcataatgaaa
acagatgaggagctggtatgtgaacggacactgaagtatttcctgggcattgcaggagga
aaatgggttgttagttatcagtggataattcagtcttttaaagaaggaagaatattggat
gaggagaaatttgaagtcagaggagatgtaatcaatgggagaaaccatcaaggtcccaaa
agggccagacaggccctgactggaaagatctttaaagactttgagatctgttgctgtgga
cccttcactgatatgactacagagcatctggagtggatggtggagctctgtggcgcctct
gtggtgaagcaacctgacctgttcacacccacagcaaattctgctgctgttgtggttgtg
cagccagatgcttggaagaaaaacgtggattatagagcaatgcagcagcagagcagcgtt
gccgtggtaactcgggagtgggtcctggacagcgtggcttgctaccagtgccaggagctc
agtgcttacctcgtgtcctga
DBGET
integrated database retrieval system
