Lonchura striata (white-rumped munia): 110484454 Help Entry 110484454         CDS       T05897                                  Symbol TRAF6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism lsr  Lonchura striata (white-rumped munia) Pathway lsr04010   MAPK signaling pathway lsr04120   Ubiquitin mediated proteolysis lsr04140   Autophagy - animal lsr04144   Endocytosis lsr04620   Toll-like receptor signaling pathway lsr04621   NOD-like receptor signaling pathway lsr04622   RIG-I-like receptor signaling pathway lsr05132   Salmonella infection lsr05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:lsr00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     110484454 (TRAF6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     110484454 (TRAF6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     110484454 (TRAF6)    04140 Autophagy - animal     110484454 (TRAF6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     110484454 (TRAF6)    04621 NOD-like receptor signaling pathway     110484454 (TRAF6)    04622 RIG-I-like receptor signaling pathway     110484454 (TRAF6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     110484454 (TRAF6)   09171 Infectious disease: bacterial    05132 Salmonella infection     110484454 (TRAF6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:lsr04131]     110484454 (TRAF6)    04121 Ubiquitin system [BR:lsr04121]     110484454 (TRAF6) Enzymes [BR:lsr01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      110484454 (TRAF6) Membrane trafficking [BR:lsr04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     110484454 (TRAF6) Ubiquitin system [BR:lsr04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     110484454 (TRAF6) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF TRAF6_Z2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-TRAF_2 zf-RING_5 SlyX PspA_IM30 Med21 RING_XB3-XBAT31 TRAF3_RING zf-RING_11 HAP1_N Sina_ZnF DUF4455 U-box UPF0242 HMMR_N Spc29 CENP-F_leu_zip ATG16 DUF1664 DUF16 PUMA_CC DUF2730 ADIP CEP104_ZnF Cortex-I_coil Motif Other DBs NCBI-GeneID:  110484454 NCBI-ProteinID:  XP_021410752 UniProt:  A0A218UXV4 LinkDB All DBs Position 5:42955275..42976963 Genome browser AA seq 545 aa AA seqDB search MSLLHSDSSCGGRDGESGCCAAMASACSAAAKEESSSVGSGAGTAPGSFSEETQGYDVEF DPPLESKYECPICLMALREAVQTPCGHRFCKGCIVKSIRDAGHKCPVDNEILLENQLFPD NFAKREILSLMVKCPNKGCSMKMELRHLDDHQLQCDFSTVECLQCQGTFPKNHLKEHMTH ECPRRQVCCPNCATSMAYEDKELHDQTCPLASIYCEYCNTVLIREQMPNHYDNDCPTAPV PCFYSAFGCPEKMQRNELARHMQEFTQVHMRMMAQSFQNISVTAANPVPFINGLPFEPAL FSHVSHAAYNCNPEVENFKETIQQLEGRLVRQDHQIRELIAKMETQNTHMAELKRTIRNL EGKITEMEAQQCNGIYIWKIENFSGLQRAQEEERPVVLHSPGFYTGKPGYKLCLRLHIQL PNAQRCANFISLFVHTMQGEYDSHLPWPFQGTIRLSILDQSEGPERQNHEEVMEAKPELL AFQRPTIHRNPKGFGYVTFMHLETLKQRTFIKDDTLLVRCEVLTRLDLSSVRREGFQPRS TDGAM NT seq 1638 nt NT seq  +upstreamnt  +downstreamnt atgagcttgctgcacagtgacagcagctgtggaggccgagatggggagagcggctgctgc gcagccatggccagcgcctgcagcgccgcagccaaggaggagagctccagcgtgggcagc ggcgcgggcaccgcgcccggctccttcagcgaggagacgcagggctacgatgtggagttc gatccgccgctggaaagcaaatacgagtgccccatctgcctgatggctctgcgggaagcg gtgcagacgccgtgcggccaccgtttctgcaaaggctgcattgtcaaatccatcagagat gcaggtcacaaatgtcctgtagacaatgaaattctgcttgaaaatcaactttttcctgac aacttcgccaaacgggaaatcctttcattaatggtcaaatgtcccaacaagggctgcagc atgaagatggagctcaggcacttagacgaccaccagctgcagtgtgatttttccactgtg gaatgccttcagtgccaaggaaccttcccaaagaaccatctgaaggagcacatgacccac gagtgtccaaggcgtcaagtgtgctgcccaaactgtgccacgtctatggcctatgaagat aaagagcttcatgaccaaacctgcccacttgccagtatatattgtgaatattgcaacaca gtgctcattagggagcagatgcctaaccactatgacaatgattgtcctactgccccagtg ccatgtttttacagtgcctttgggtgtcctgaaaagatgcaaaggaatgaactggcacgg catatgcaggagttcactcaggttcacatgaggatgatggctcagagttttcaaaatatc agtgttactgctgcaaatcctgtacctttcatcaatggcctaccctttgagcctgccctt ttctcacacgtgtcacatgctgcatacaactgcaatccagaagttgaaaacttcaaggaa actattcagcagttggaaggtcgtctggtgagacaagatcaccaaatcagggaactcatt gctaaaatggagacgcagaacactcacatggcagaactcaaacgtactatccgaaatttg gagggaaagattactgaaatggaggcgcaacaatgtaatggtatttatatctggaagatt gagaacttcagtggactgcagagagcccaggaagaagagagacctgtagtgttgcacagt cctggcttctatacaggaaagcctggctacaagctgtgcttgcgcctgcatatccagtta ccaaatgctcagcgctgtgctaattttatctctctgtttgtgcacactatgcaaggggaa tatgacagccacctgccctggcctttccaaggcaccattcgactttctattttggatcaa tcagaaggcccagaaaggcagaaccatgaagaggtgatggaagccaagccagagctactg gccttccagagaccaacaattcaccgcaatccaaaaggttttggttatgtgactttcatg cacctggagaccttgaaacagagaaccttcatcaaggatgacacgctcctggtgcgctgc gaggttctcacgcgcctggacttgagcagtgtccgcagggaagggttccagccccgcagt actgatggagccatgtag

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