Lonchura striata (white-rumped munia): 110484936
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Entry
110484936 CDS
T05897
Symbol
KDM2A
Name
(RefSeq) lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
110484936 (KDM2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lsr03000
]
110484936 (KDM2A)
04121 Ubiquitin system [BR:
lsr04121
]
110484936 (KDM2A)
03036 Chromosome and associated proteins [BR:
lsr03036
]
110484936 (KDM2A)
Enzymes [BR:
lsr01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
110484936 (KDM2A)
Transcription factors [BR:
lsr03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
110484936 (KDM2A)
Ubiquitin system [BR:
lsr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
110484936 (KDM2A)
Chromosome and associated proteins [BR:
lsr03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
110484936 (KDM2A)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
110484936 (KDM2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
Cupin_8
LRR_4
Motif
Other DBs
NCBI-GeneID:
110484936
NCBI-ProteinID:
XP_021411610
LinkDB
All DBs
Position
5:60336411..60369040
Genome browser
AA seq
1207 aa
AA seq
DB search
MAAAAPVRGQRRRRDLEEEDDDSSPGVSFSLSSEESEMEPEEERIRYSQRLRGTMRRRYE
DDGISDDEIEGKRTFDLEEKLSTNKFNSTFVVFMEGKDFTVEYIQRGGLRDPLIFRSSDG
LGIKMPDPDFSVNDVRLCVGSRRIVDVMDVNTQRDIEMSMAQWARYYETPEEEREKLYNV
ISLEFSHTKLENLVQRPATVDLIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLMS
VKGCYTDFHVDFGGTSVWYHIHRGGKIFWLIPPTPQNLELYENWLLSGKQGDIFLGDRVS
ECQRIELKQGYTFVIPSGWIHAVYTPMDTLVFGGNFLHSFNIPMQLRIYSIEDRTRVPNK
FRYPFYYEMCWYVLERYVYCITSRSHLTKDFQKESLSMDMELSSSDSVNMEEEEEEEDDE
DAAGKESRRPMTRRSILTSPIANGANVDYDELGKSCRSSLPGLKKTPSIDSSDSSRGSQN
GQAWDPSGGSPRKSRKVHLTQFELEGLRCLVDKLESLPLHKKCVPTGIEDEDALIADVKL
LLEEYANSDPKLALTGVPIVQWPKRDKLKLQTRLRVRLPTIPITKPHTMKPAPRPTPVRS
TVSPIVSGARRRRVRCRKCKACMQGECGMCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLP
HSVTCALCGEVDQNEDSQDFEKKLMECCICNEIVHPGCLQMDGEGLLNDELPNCWECPKC
YQGDDTEKGQKRKVEESDDDTAQAKVLRPLRSCEEPLTPPPNSPTPMLQLIHDPASPRGV
VTRSSPGAGPSDHHSASRDERFKRRQLLRLQATERTMVREKENNPSGKKELSEVEKAKLH
GSYLTVTLQRPTKDVHGTSIVPKLQAITASSANLQHSPRVVVRHAPARIPLRSGGDEEAA
AEEEEEDEEEEDENAEEGGAARLNGRGGRAQEGEESCVQREVWMSVFRYLTRRELCECMR
VCKTWYKWCCDKRLWTKIDLSRCKSITPQALSGIIKRQPVSLDLSWTNISKKQLTWLVNR
LPGLKDLILAGCSWSAVCALSTSSCPLLRTLDLRWAVGIKDPQIRDLLTPPTDKPSQDNR
SKLRNMIDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCNHLTDQSANLLTAVGSSTRNS
LTELNMAGCNKLTDQALLYLRRISNVTLIDLRGCKQITRKACEHFISDLSINSLYCLSDE
KLIQKIS
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggctcctgtaagaggacaaaggcgcaggagagacctggaggaagaggac
gatgacagcagtcctggcgtgtccttctcgctctcctccgaggagtcggagatggagccc
gaggaagaacggatccgttacagccaaagactgcgtggcacaatgaggcggcgttatgag
gacgatggcatctccgatgatgagattgaagggaagaggacgtttgacctcgaggaaaag
ctgtccaccaacaagttcaactccacttttgtagtcttcatggaaggcaaagacttcaca
gttgaatacatccagcggggtggcctgcgggacccactcatcttcaggagctcagacggc
ctggggataaagatgccagatccggacttcagcgtgaacgatgtgcggctgtgtgtgggg
agccggcggatagtggatgtgatggatgtgaacacgcagcgggacatcgagatgtccatg
gcacagtgggcacgctactacgaaacaccagaggaggagcgggagaagctctacaacgtc
atcagcctcgagttcagccacaccaagctggagaacctggtgcagagacctgctacggtg
gatttgattgactgggttgataacatgtggcccaggcacctgaaggaaagtcagacagag
tctaccaatgccatcctggagatgcagtacccaaaggtgcagaaatactgtttgatgagt
gtcaagggctgctacacagatttccacgtggactttggtggcacttctgtgtggtaccac
atccaccgagggggaaagatcttctggctgatccctcccacaccccagaacctggagctc
tatgaaaactggcttctctcagggaagcagggagacattttccttggggacagagtgtca
gagtgccagcgcatcgagctcaagcagggctacacatttgtcatcccctcaggttggatc
catgctgtgtacactcccatggacacgctggtttttggcggcaacttcttacacagcttc
aacatccctatgcagctccggatctacagcattgaggaccgcacacgggtcccaaataaa
tttcgttatcccttctattacgagatgtgttggtacgtgctggagcgttacgtgtactgc
atcaccagccgctcccacctgaccaaggacttccagaaggaatccctcagcatggatatg
gagctgagctcatcagactccgtgaacatggaagaggaggaggaggaggaggatgatgag
gatgcagcagggaaggaatcccggcgccccatgaccaggaggtccattctcaccagcccc
attgccaacggtgccaacgtggactatgacgaactgggcaagagctgccggagcagcctg
ccggggctcaagaagaccccatccatagactcttccgactccagccggggctcccaaaac
ggccaggcctgggacccaagtgggggcagcccccgcaagagcaggaaggtgcacctgacc
cagtttgagctggaggggctgcgctgcctcgtggacaagctggagtcactccctctgcac
aagaagtgtgttcccactggcattgaggatgaggacgccctcatcgctgatgtcaagctg
ctgttggaagaatacgcaaacagcgaccccaaactggcacttacaggcgtccccatcgtc
cagtggcccaagagagataagctaaagctccagacccggctgcgggtgcgcctgcccacc
atccccatcaccaagccgcacaccatgaagccagcaccgcgcccaactcccgtcaggtcc
acggtgtctcccatcgtgtcgggcgcccggcggaggcgagtgcggtgccggaaatgcaag
gcctgcatgcagggcgagtgtggcatgtgccactactgcagggacatgaagaagttcggt
gggcccggccgcatgaagcagtcctgtgtcctccggcagtgcttggcgcccaggttgcct
cactcggtcacgtgtgcactttgtggggaggtggatcagaacgaggactcacaggacttt
gagaagaagctcatggagtgctgtatctgcaatgagatcgtccaccctggctgtctgcag
atggatggggaagggctgctcaatgatgagctccccaactgctgggagtgccccaaatgc
taccaaggtgatgacacagagaagggccagaagcggaaggtggaggagagcgatgacgac
acggcacaagccaaggtgctgcggcccctgcggagctgcgaggagcccctgacccccccg
cccaactcgcccaccccgatgctgcagctgatccacgaccccgcgtccccccgtggggtg
gtgacacgctcgtccccgggggccgggcccagcgaccaccacagtgccagccgggacgag
cgcttcaagcgccggcagctgctgcggctgcaggccacggagagaaccatggtgcgggag
aaggagaacaaccccagcggcaagaaggagctgtcagaggtggagaaggccaagctgcac
ggctcttacctcaccgtgacgctccagcgccccaccaaagatgtccacggcacttcgatt
gtccccaagctccaagccatcacagcctcctcggccaacctgcagcactcgccacgtgtg
gtcgtgcgccacgcgcccgccaggatacccctgcggagtgggggcgacgaggaggcggcc
gctgaggaagaggaggaggacgaggaggaggaggacgagaacgcggaggaggggggggcg
gcccggctgaacgggcgcgggggccgggcgcaggagggcgaggagagctgcgtccagcgc
gaggtctggatgtccgtgttccgctacctcacccgcagggagctctgcgagtgcatgcgg
gtgtgcaagacctggtacaagtggtgctgtgacaagagattgtggacaaagatagacttg
agcaggtgcaagtccatcaccccgcaggcgctgagtggcatcatcaaaaggcagccggtc
agccttgacctcagctggaccaatatctcaaaaaaacagcttacatggctcgtcaacagg
ctgccaggcctaaaagacctcatcctagcgggctgttcctggtctgcggtctgtgccctc
agtacctccagctgcccccttctcaggaccctcgatcttcggtgggcagtaggaatcaag
gaccctcagatccgggacttacttacacctccaacagacaaacccagtcaggacaatcgc
agcaaactccgcaacatgatcgacttccggctcgccgggctggacatcacggacgccacg
ctgcgcctgatcatccgccatatgcccctgctctcccgcctcgacctcagccactgcaac
cacctcacggaccagtcggccaacctcctcaccgccgtgggctcctccacacgcaactcc
ctcaccgagctcaacatggcaggctgcaataagctgacggaccaggccttgctgtacctg
cgccgcatctccaacgtcaccctcattgacttgcggggctgcaaacagatcacccgcaaa
gcctgtgagcacttcatctcggacctgtccatcaacagcctctactgcctgtccgatgag
aagctgatccaaaaaatcagctag
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integrated database retrieval system
