Lonchura striata (white-rumped munia): 110484936
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Entry
110484936 CDS
T05897
Symbol
KDM2A
Name
(RefSeq) lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
110484936 (KDM2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lsr03000
]
110484936 (KDM2A)
04121 Ubiquitin system [BR:
lsr04121
]
110484936 (KDM2A)
03036 Chromosome and associated proteins [BR:
lsr03036
]
110484936 (KDM2A)
Enzymes [BR:
lsr01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
110484936 (KDM2A)
Transcription factors [BR:
lsr03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
110484936 (KDM2A)
Ubiquitin system [BR:
lsr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
110484936 (KDM2A)
Chromosome and associated proteins [BR:
lsr03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
110484936 (KDM2A)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
110484936 (KDM2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
LRR_FBXL15
JmjC
LRR_SKP2
Cupin_8
Protamine-3
LRR_4
Motif
Other DBs
NCBI-GeneID:
110484936
NCBI-ProteinID:
XP_021411610
LinkDB
All DBs
Position
5:60336411..60369040
Genome browser
AA seq
1207 aa
AA seq
DB search
MAAAAPVRGQRRRRDLEEEDDDSSPGVSFSLSSEESEMEPEEERIRYSQRLRGTMRRRYE
DDGISDDEIEGKRTFDLEEKLSTNKFNSTFVVFMEGKDFTVEYIQRGGLRDPLIFRSSDG
LGIKMPDPDFSVNDVRLCVGSRRIVDVMDVNTQRDIEMSMAQWARYYETPEEEREKLYNV
ISLEFSHTKLENLVQRPATVDLIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLMS
VKGCYTDFHVDFGGTSVWYHIHRGGKIFWLIPPTPQNLELYENWLLSGKQGDIFLGDRVS
ECQRIELKQGYTFVIPSGWIHAVYTPMDTLVFGGNFLHSFNIPMQLRIYSIEDRTRVPNK
FRYPFYYEMCWYVLERYVYCITSRSHLTKDFQKESLSMDMELSSSDSVNMEEEEEEEDDE
DAAGKESRRPMTRRSILTSPIANGANVDYDELGKSCRSSLPGLKKTPSIDSSDSSRGSQN
GQAWDPSGGSPRKSRKVHLTQFELEGLRCLVDKLESLPLHKKCVPTGIEDEDALIADVKL
LLEEYANSDPKLALTGVPIVQWPKRDKLKLQTRLRVRLPTIPITKPHTMKPAPRPTPVRS
TVSPIVSGARRRRVRCRKCKACMQGECGMCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLP
HSVTCALCGEVDQNEDSQDFEKKLMECCICNEIVHPGCLQMDGEGLLNDELPNCWECPKC
YQGDDTEKGQKRKVEESDDDTAQAKVLRPLRSCEEPLTPPPNSPTPMLQLIHDPASPRGV
VTRSSPGAGPSDHHSASRDERFKRRQLLRLQATERTMVREKENNPSGKKELSEVEKAKLH
GSYLTVTLQRPTKDVHGTSIVPKLQAITASSANLQHSPRVVVRHAPARIPLRSGGDEEAA
AEEEEEDEEEEDENAEEGGAARLNGRGGRAQEGEESCVQREVWMSVFRYLTRRELCECMR
VCKTWYKWCCDKRLWTKIDLSRCKSITPQALSGIIKRQPVSLDLSWTNISKKQLTWLVNR
LPGLKDLILAGCSWSAVCALSTSSCPLLRTLDLRWAVGIKDPQIRDLLTPPTDKPSQDNR
SKLRNMIDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCNHLTDQSANLLTAVGSSTRNS
LTELNMAGCNKLTDQALLYLRRISNVTLIDLRGCKQITRKACEHFISDLSINSLYCLSDE
KLIQKIS
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggctcctgtaagaggacaaaggcgcaggagagacctggaggaagaggac
gatgacagcagtcctggcgtgtccttctcgctctcctccgaggagtcggagatggagccc
gaggaagaacggatccgttacagccaaagactgcgtggcacaatgaggcggcgttatgag
gacgatggcatctccgatgatgagattgaagggaagaggacgtttgacctcgaggaaaag
ctgtccaccaacaagttcaactccacttttgtagtcttcatggaaggcaaagacttcaca
gttgaatacatccagcggggtggcctgcgggacccactcatcttcaggagctcagacggc
ctggggataaagatgccagatccggacttcagcgtgaacgatgtgcggctgtgtgtgggg
agccggcggatagtggatgtgatggatgtgaacacgcagcgggacatcgagatgtccatg
gcacagtgggcacgctactacgaaacaccagaggaggagcgggagaagctctacaacgtc
atcagcctcgagttcagccacaccaagctggagaacctggtgcagagacctgctacggtg
gatttgattgactgggttgataacatgtggcccaggcacctgaaggaaagtcagacagag
tctaccaatgccatcctggagatgcagtacccaaaggtgcagaaatactgtttgatgagt
gtcaagggctgctacacagatttccacgtggactttggtggcacttctgtgtggtaccac
atccaccgagggggaaagatcttctggctgatccctcccacaccccagaacctggagctc
tatgaaaactggcttctctcagggaagcagggagacattttccttggggacagagtgtca
gagtgccagcgcatcgagctcaagcagggctacacatttgtcatcccctcaggttggatc
catgctgtgtacactcccatggacacgctggtttttggcggcaacttcttacacagcttc
aacatccctatgcagctccggatctacagcattgaggaccgcacacgggtcccaaataaa
tttcgttatcccttctattacgagatgtgttggtacgtgctggagcgttacgtgtactgc
atcaccagccgctcccacctgaccaaggacttccagaaggaatccctcagcatggatatg
gagctgagctcatcagactccgtgaacatggaagaggaggaggaggaggaggatgatgag
gatgcagcagggaaggaatcccggcgccccatgaccaggaggtccattctcaccagcccc
attgccaacggtgccaacgtggactatgacgaactgggcaagagctgccggagcagcctg
ccggggctcaagaagaccccatccatagactcttccgactccagccggggctcccaaaac
ggccaggcctgggacccaagtgggggcagcccccgcaagagcaggaaggtgcacctgacc
cagtttgagctggaggggctgcgctgcctcgtggacaagctggagtcactccctctgcac
aagaagtgtgttcccactggcattgaggatgaggacgccctcatcgctgatgtcaagctg
ctgttggaagaatacgcaaacagcgaccccaaactggcacttacaggcgtccccatcgtc
cagtggcccaagagagataagctaaagctccagacccggctgcgggtgcgcctgcccacc
atccccatcaccaagccgcacaccatgaagccagcaccgcgcccaactcccgtcaggtcc
acggtgtctcccatcgtgtcgggcgcccggcggaggcgagtgcggtgccggaaatgcaag
gcctgcatgcagggcgagtgtggcatgtgccactactgcagggacatgaagaagttcggt
gggcccggccgcatgaagcagtcctgtgtcctccggcagtgcttggcgcccaggttgcct
cactcggtcacgtgtgcactttgtggggaggtggatcagaacgaggactcacaggacttt
gagaagaagctcatggagtgctgtatctgcaatgagatcgtccaccctggctgtctgcag
atggatggggaagggctgctcaatgatgagctccccaactgctgggagtgccccaaatgc
taccaaggtgatgacacagagaagggccagaagcggaaggtggaggagagcgatgacgac
acggcacaagccaaggtgctgcggcccctgcggagctgcgaggagcccctgacccccccg
cccaactcgcccaccccgatgctgcagctgatccacgaccccgcgtccccccgtggggtg
gtgacacgctcgtccccgggggccgggcccagcgaccaccacagtgccagccgggacgag
cgcttcaagcgccggcagctgctgcggctgcaggccacggagagaaccatggtgcgggag
aaggagaacaaccccagcggcaagaaggagctgtcagaggtggagaaggccaagctgcac
ggctcttacctcaccgtgacgctccagcgccccaccaaagatgtccacggcacttcgatt
gtccccaagctccaagccatcacagcctcctcggccaacctgcagcactcgccacgtgtg
gtcgtgcgccacgcgcccgccaggatacccctgcggagtgggggcgacgaggaggcggcc
gctgaggaagaggaggaggacgaggaggaggaggacgagaacgcggaggaggggggggcg
gcccggctgaacgggcgcgggggccgggcgcaggagggcgaggagagctgcgtccagcgc
gaggtctggatgtccgtgttccgctacctcacccgcagggagctctgcgagtgcatgcgg
gtgtgcaagacctggtacaagtggtgctgtgacaagagattgtggacaaagatagacttg
agcaggtgcaagtccatcaccccgcaggcgctgagtggcatcatcaaaaggcagccggtc
agccttgacctcagctggaccaatatctcaaaaaaacagcttacatggctcgtcaacagg
ctgccaggcctaaaagacctcatcctagcgggctgttcctggtctgcggtctgtgccctc
agtacctccagctgcccccttctcaggaccctcgatcttcggtgggcagtaggaatcaag
gaccctcagatccgggacttacttacacctccaacagacaaacccagtcaggacaatcgc
agcaaactccgcaacatgatcgacttccggctcgccgggctggacatcacggacgccacg
ctgcgcctgatcatccgccatatgcccctgctctcccgcctcgacctcagccactgcaac
cacctcacggaccagtcggccaacctcctcaccgccgtgggctcctccacacgcaactcc
ctcaccgagctcaacatggcaggctgcaataagctgacggaccaggccttgctgtacctg
cgccgcatctccaacgtcaccctcattgacttgcggggctgcaaacagatcacccgcaaa
gcctgtgagcacttcatctcggacctgtccatcaacagcctctactgcctgtccgatgag
aagctgatccaaaaaatcagctag
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integrated database retrieval system
