Levilactobacillus suantsaii: H3M12_05675
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Entry
H3M12_05675 CDS
T06901
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lsua
Levilactobacillus suantsaii
Pathway
lsua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H3M12_05675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsua03019
]
H3M12_05675
03009 Ribosome biogenesis [BR:
lsua03009
]
H3M12_05675
Enzymes [BR:
lsua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H3M12_05675
Messenger RNA biogenesis [BR:
lsua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H3M12_05675
Ribosome biogenesis [BR:
lsua03009
]
Prokaryotic type
rRNA helicases
H3M12_05675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_30
Helicase_RecD
CMS1
Cas3-like_C_2
adh_short
NAGidase
Motif
Other DBs
NCBI-ProteinID:
QMU09119
LinkDB
All DBs
Position
1242349..1243893
Genome browser
AA seq
514 aa
AA seq
DB search
MKFKELGLSEDLLKAVTEAGYEEATPIQAETIPMVLAGQDVIGQAQTGTGKTAAFALPIL
EKIDKKNPNVQALVVSPTRELAIQTQEEIYKLGRTERANVQVVYGGADIRRQIKSLKNHP
QVVVGTPGRLLDHIRRRTLKLDHVQMLVLDEADEMLNMGFLDDIEDIIKQLPEERQTMLF
SATMPPEIKRVGVQFMQDPKHVKIKAKELTTDLIDQYYVRSRDFEKFDIMTRFFDVQDPD
LTIVFTRTKRRVDEIANGLKARGYNAAGIHGDLTQKRRTQIMNEFRHGKLDILVATDVAA
RGIDINDVTHVYNYDIPQDPDSYVHRVGRTGRAGNHGVSMTFVTPNEMGYLREIEKLTRV
RMLPLKPPSAEEAFVGQLGVAKEAVSDLISKTDTEKYGKAADALLEEYDAADIAAALLNE
VTKDDSSQVPVKITPERPLPKRGGKRRGGGYHRGGGYHRGNNHRGGGEHRHYDRNRRGGS
DRNEHRGGNRDRRRDNGGRRSEGSKHGFTIRKKD
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttaaagaactgggtctctccgaagacctactgaaagctgtgactgaagcaggt
tacgaagaagcgaccccaattcaggctgagaccatccccatggtgttagccggccaagat
gtgattggccaagctcagacggggaccggtaaaacggccgccttcgcactccccattctg
gaaaagattgacaaaaaaaatcctaacgtgcaggcccttgtcgtttccccaacgcgggaa
ctggccatccagactcaagaagaaatctataaattaggccggactgaacgggccaacgtc
caagtggtttacggtggggcggatattcgccggcaaatcaagagtttaaagaaccatcct
caagtggtggtcgggactcctggtcggttattagaccacatccggcgccggacgctgaaa
ctggaccacgtgcaaatgctggtcctggacgaagccgacgaaatgttgaacatgggtttc
ttggatgatatcgaagacatcatcaagcaattgccagaagaacggcaaaccatgctattc
tcagcgactatgccacccgaaatcaaacgggtcggggtgcaattcatgcaggacccgaag
cacgtcaagatcaaggccaaggaattgaccaccgatttgatcgatcaatactacgtccgg
tctcgtgattttgagaaattcgatatcatgacgcggttcttcgacgtccaagatccggac
ttgaccatcgtcttcacgcggactaagcgtcgggtcgacgaaatcgccaacggtcttaaa
gcccggggctacaacgctgctgggattcatggggatttgacgcaaaagcgtcggacccaa
atcatgaatgagttccggcacggtaaattggacatcttagtggcgaccgacgtagcggcg
cggggaatcgacatcaacgatgtgactcacgtctacaactacgatatcccacaagatcct
gacagttacgtgcaccgggtcggccggactggccgggccgggaatcacggggtatccatg
accttcgtgacgccaaacgaaatgggttacttacgtgaaatcgagaagttgacccgggtg
cggatgttaccattgaagccaccttcggctgaagaggcttttgtaggccaattaggcgtg
gctaaggaagccgtcagcgatttgatttcgaagacggataccgaaaagtacggcaaggca
gcggatgctttgttggaagaatacgacgcagcggatattgccgcggccttgttgaacgaa
gtcaccaaggacgacagcagtcaggtgcccgtcaagatcacgccagaacggccattgcct
aagcgcggtggcaagcggcgtggtggtggttaccaccgtggcggcggttatcaccggggc
aacaaccatcggggtggcggcgaacaccggcactacgaccgaaaccggcgtggcggcagt
gaccgcaacgaacaccgcggtggcaaccgtgaccggcggcgcgacaatggtggtcggcgt
tccgaaggcagtaagcacggctttacgattcggaaaaaagactag
DBGET
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