Levilactobacillus suantsaii: H3M12_05770
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Entry
H3M12_05770 CDS
T06901
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lsua
Levilactobacillus suantsaii
Pathway
lsua03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H3M12_05770 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsua03400
]
H3M12_05770 (mfd)
Enzymes [BR:
lsua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H3M12_05770 (mfd)
DNA repair and recombination proteins [BR:
lsua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H3M12_05770 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
SNF2-rel_dom
UB2H
RecG_dom3_C
MFD_D3
PTH2
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
QMU07029
LinkDB
All DBs
Position
1261961..1265512
Genome browser
AA seq
1183 aa
AA seq
DB search
MNLEGFLTQTPAYTAIRQAVAPGQRQLVTGLNGSAETLLIASLLHDQQRSIVYVTDTLYH
AGKLVEDLANILGDDELYEFPVEELLAAEVATSSPEYRAERIAALRALQSDRPVVVVTAL
SGLRRFLPAPANFAAARFAVKVGADMDLEQLQQQLFAMGYTPQKLVAAPGDFAVRGSIVD
IYPLGTDYPVRIDFFDTEVDSLRYFDPATQRSVENIDQVEILPATDFILTAAERTAGAQA
LSQALATQTAELSADDATTLTTQVQPLIDGLKKGSIDPQLMEFADYLFPDHHQILDYLAA
DGTVLFGDYARLQDGERQLLEDEANWATDKLAHHQIFAKQTFGGELRPIVRDDPHAQIML
ALFQKGMGNLRFTAVTNVVTRAMQQFFSQLPVMKTEIDRWHHQKQTVVLLVQDEERLAKI
EKTLDDFEIQVVLTKRENLQPGITQLVPERLQTGFELPEANLVVITEAEMFQKITKKRPR
RQNMANAERLKSYTDLKPGDYVVHVNHGIGKFIGMQTLTVDGVHQDYMTIDYQDNAQLFI
PVTQLNLIQKYVSSEDKKPRINKLGGSEWAKTKRKVAAKIEDIADELVDLYAKRAAEKGY
AFPPDDSLQIDFDQSFPYVETPDQLRSIKEVKHDMEKSRPMDRLLVGDVGYGKTEVALRA
AFKAVEAGKQVAFLVPTTILAQQHYDIMVSRFEGYPINVEMFSRFRTTKQIHQSLKDLES
GKLDIVVGTHRLLSKDVKFKNLGLVLVDEEQRFGVKHKERLKELKANVDVLTLTATPIPR
TLHMSMLGVRDLSVIETPPANRFPIQTYVMEQNAGAIQDGIRREMQRGGQVFYLHNRVDD
IEKTVSQLQALVPEAQIGYIHGQMTEAQLEGGLFDFLRGEYDVLVTTTIIETGIDIPNAN
TLFVENADRMGLSQLYQLRGRIGRSNRVAYAYFTYQPNKVLTEVSEKRLEAIKDFTELGS
GFKIAMRDLSIRGAGNLLGKQQHGFINSVGYDLYTQMLSDAVAKKRGQTAQPKTDTTVEL
GVEAYLPSDYIEDEQQKIEMYKRIRQLDSDDEVSEIQADLIDRFGDYPKPVAQLLTIGQL
KLAADLALIEKLRRVNGDVFVTVSKQGTDILGGEDVFKALAATELKATVTINDDRLHVKL
VIQPKMTVDDWLPQVQQFVSALRDIVVQTTAPQKSTDQSSTSK
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
gtgaatttagaaggatttttgacccaaacaccggcctacacggcgattcggcaggcggtt
gcgccgggtcagcgacaactcgtgaccgggctcaacggttcggccgagacgttgctgatt
gctagcctccttcatgaccagcaacgatcgatcgtgtacgtgacggatactctctaccac
gccgggaaattggtggaagacctggccaatatcttaggtgacgacgaattgtacgagttc
ccggtggaagaattgttagcggcggaagtcgcgaccagttcaccagagtaccgggcggaa
cggatcgctgctttacgggcgttacaaagtgaccggccggtcgtagtcgtcacggcctta
tcgggcttgcggcgtttcttaccggcccccgcgaactttgcggcggcacgatttgccgtc
aaagtgggtgccgacatggacctagaacagttacagcaacagctttttgccatgggctat
acgccccaaaaattagtcgcagcacccggggacttcgcggtccgcgggtcaattgtcgat
atctatccgttgggcacggactatccggtccgcatcgacttcttcgataccgaagtggat
tcgctgcgatacttcgatccagccacgcaacgcagtgtggaaaacatcgaccaagttgaa
atcttacccgcgaccgactttattttaacggcagcggaacggacggcaggggcccaggcg
ttgagccaggcgttagcgacgcagaccgctgagctatcagcggacgatgccacgacgttg
accacccaggtccaaccattgatcgatggcttgaagaagggatccatcgacccgcaactg
atggaatttgccgattacttgtttccggaccatcaccagatcttggattacctggcggcg
gacgggaccgtgctattcggcgattacgctcgattgcaagatggtgaacgtcagctctta
gaagacgaagccaattgggcgactgataagctggcccaccaccagatttttgccaagcag
accttcggcggggaactccggcccatcgtgcgcgatgatccccatgcgcagattatgctg
gccctgtttcaaaaggggatggggaatctccgattcacggcggtgaccaacgtggtgacg
cgggccatgcaacagttctttagccagttacccgtgatgaagactgaaatcgaccgctgg
caccaccagaagcagaccgtggtgctattggttcaggacgaagaacggttggcgaagatt
gaaaaaacgctagacgactttgagattcaagtggtgttgaccaagcgggagaatctccag
ccaggaatcacccagttggtcccggaacggctgcagaccggttttgaattgccggaagct
aacttggtggtcatcaccgaagccgagatgtttcaaaagattacgaagaaacggccgcga
cggcagaacatggccaacgcggaacgtttaaagagttacactgatttaaaacccggtgac
tacgtggtgcacgtcaaccacgggattgggaagttcatcgggatgcagacgttgaccgtc
gatggggtccatcaggattacatgaccatcgattatcaggacaacgcgcagttgtttatt
ccggtcacccaacttaacctgattcaaaagtacgtgtcgtcggaagacaagaagccccgc
atcaacaagttgggcggctccgagtgggccaagactaagcgcaaggtcgccgcaaagatt
gaagatatcgccgatgaattggtcgacctctacgccaagcgggcggcagaaaagggctat
gccttcccgccggatgatagtctccagatcgactttgaccaaagttttccgtacgtggaa
acgccggaccagttacggtcaatcaaggaagtcaagcacgacatggagaagtcgcggccg
atggaccggctcttagtcggtgacgtgggctacgggaagaccgaagttgcgttacgggcg
gcctttaaggcggtcgaagccggcaaacaggtggcctttctggtgccaacgaccattttg
gcgcaacaacactatgacatcatggtcagccgttttgaagggtaccccatcaacgtcgag
atgttctcccggttccggaccaccaagcagatccaccaatcattaaaggacctggaaagt
gggaaactcgacatcgtggtggggacccaccggttattgtcgaaagacgtgaagttcaag
aacttaggcttggtgctggtcgatgaggaacaacgcttcggggtcaagcataaggaacgg
ttgaaggaattgaaggccaacgtggatgtgttgacgttgaccgcaacgccgattccgcgg
accttgcacatgtcaatgctcggggtccgtgacctttccgtgatcgagacgccaccggcg
aaccggttcccgattcagacctacgtgatggaacaaaatgcgggggccattcaagacggg
attcgccgggagatgcaacggggcggtcaggtcttctacctgcataaccgggtggacgac
atcgagaagaccgttagtcagcttcaggcgttggtgccggaagcgcagattggctacatt
cacgggcagatgaccgaggcccagcttgaagggggcctctttgactttctgcgcggtgaa
tacgacgtgttggtcaccacgaccatcatcgagaccggaatcgatatcccgaacgcgaac
accttgttcgtggaaaatgccgaccggatgggcctgtcacagctctatcagttgcgcgga
cggattggccgaagcaaccgagtggcctacgcgtacttcacctatcaaccgaataaggtc
ttgaccgaagtcagtgaaaagcgcctggaggccatcaaggacttcaccgaattagggtcc
ggctttaaaattgccatgcgggacctctcgattcggggcgcgggtaatttgctggggaag
caacaacacgggttcatcaattccgtggggtacgacttgtatacccagatgctcagcgat
gccgtggccaagaagcggggacaaacggcgcaaccgaagacggataccaccgtagaactg
ggtgtggaagcctacctgccgagcgactacatcgaagacgaacaacagaaaatcgagatg
tataagcggattcggcagttggatagtgacgatgaagtcagtgagattcaagctgatctg
attgaccggtttggcgactacccgaagcccgtggcccagttgctaacgattggccagttg
aagctggctgccgacttggcattgattgaaaagctgcggcgggtcaacggcgatgtcttc
gtcacggtctctaaacaggggaccgatattctcggcggcgaagacgtcttcaaggccttg
gccgcaactgagctgaaggcgacggtcaccatcaacgacgaccggctgcacgtgaagctg
gtcatccaaccgaagatgacggtcgatgactggttgccacaagtgcaacagttcgtgtcg
gcgttacgcgacatcgtggtgcagaccacggccccgcaaaagtcgaccgaccaatcatcg
acgagtaaataa
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integrated database retrieval system
