Levilactobacillus suantsaii: H3M12_08230
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Entry
H3M12_08230 CDS
T06901
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lsua
Levilactobacillus suantsaii
Pathway
lsua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H3M12_08230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsua03019
]
H3M12_08230
Messenger RNA biogenesis [BR:
lsua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H3M12_08230
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
SIS_2
Motif
Other DBs
NCBI-ProteinID:
QMU07454
LinkDB
All DBs
Position
complement(1781755..1783434)
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AA seq
559 aa
AA seq
DB search
MNKLNVKNNETAIFGVGGLGEIGKNTYGIQFQDEIVLIDAGIKFPEDELLGIDYVIPDYQ
YLVENQSKIKALVITHGHEDHIGGIPYLLQALNVPVYAGPLALALIKNKLEEHGLLKSTE
LHTIDDDTVLKFRKMSVSFFRTTHSIPDTLGIAVHTPVGTIVETGDYKFDLTPVTNQPPD
LQKMAKLGADGVLCLMSDSTNAERPIWTKSEKWVGKSIRRIFDQVEGRVIFATFASNISR
IETACETALAHNRKIAVFGRSMEAAIVNGRELGYLNIPDDALVDANTIRSLPANKVMILC
TGSQGEPMAALSRIANGTHRQITIQPGDTVVFSSNPIPGNTISVNHVINELEEAGANVIH
GRVNNIHTSGHGGQEEQKLMLRLMQPKFFMPIHGEYRMLKIHTELAEQCGVPLDRSFILQ
NGDVLALTKDSARVAGHFAAGDVYIDGSGIGDIGNVVLRDRQLLSEEGLVVVVATIDLKH
QEIKAGPDLLSRGFVYMRESGELLNEGRRRVFQTIRRAMRNPKATEASIRNAVIDDLQNF
LFEKTERHPMILPMFIMTK
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagctaaacgtcaaaaataacgaaacagctatctttggcgtgggtggattaggt
gaaattgggaaaaatacttacggcattcagtttcaggatgaaattgttctgatcgatgct
gggattaaattccccgaagacgaattactaggaatcgattacgtgattccggattaccaa
tacctcgttgaaaaccagtccaagatcaaagcgctagtgatcacccacggccacgaagac
cacattggtgggattccttatttgctccaagcgctcaatgttcccgtttatgcggggcca
ttagccttagctttaattaagaacaaactggaagaacacggattattaaaatcaactgaa
ctgcacacaattgacgatgatacggttcttaagttccgcaagatgagtgtttctttcttc
cgaacgacccactcgattcctgatacactggggattgcagtgcatacgccggtcggcacc
atcgtcgaaactggggactacaagttcgacctgacaccggtcaccaaccagccgcctgat
ctccaaaagatggccaaactgggggcagatggtgttctgtgcctgatgtccgacagtacc
aacgcagagcgccctatctggacgaaatctgaaaagtgggtcggaaaatccatccgacgt
attttcgaccaagtcgaaggtcgggtgatttttgccacttttgcgtctaacatttctcgg
attgaaacagcgtgtgaaactgcgctggcgcataaccggaagattgccgtgtttggtcgc
tccatggaagccgctatcgtcaatggtcgggaattaggttacttaaacattcctgacgac
gcccttgtcgacgccaacacgattcgctcccttccagccaacaaggtcatgattctgtgt
accggatctcaaggtgaaccgatggcggccctttcacgaattgcgaacgggactcaccgg
caaatcactattcaacctggcgacaccgtcgtcttctcgagtaacccgattccaggcaac
actatctccgtcaaccacgtcatcaacgagttggaagaagctggcgccaacgttatccac
ggccgcgtgaacaacatccacacgtctggacacgggggccaagaagaacagaagctgatg
ctccgactgatgcaaccgaagttcttcatgccgattcacggagaataccggatgttaaag
attcatactgagcttgccgaacaatgtggcgtgccccttgaccggagctttatcctccaa
aatggtgacgtcttagcgttgaccaaggattcagcccgggtcgctggtcactttgctgcg
ggcgatgtctacatcgacggctccggcatcggtgatattggtaacgtcgtgttacgcgac
cggcaattactttccgaagaaggcttagttgttgtggtcgccactatcgacctcaaacat
caagaaatcaaagctggtcctgacttgctctcacgcggtttcgtctacatgcgtgaatct
ggtgaattactgaatgagggccgccgacgcgtcttccaaacgattcgccgagcgatgcgg
aacccgaaggcaaccgaagcctcgattcgcaacgccgttatcgacgatctgcaaaacttc
ttgtttgagaagactgagcggcacccgatgattctgccaatgtttatcatgacaaaataa
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