Levilactobacillus suantsaii: H3M12_08345
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Entry
H3M12_08345 CDS
T06901
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lsua
Levilactobacillus suantsaii
Pathway
lsua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H3M12_08345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsua03019
]
H3M12_08345
Messenger RNA biogenesis [BR:
lsua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H3M12_08345
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
TrkA_C
DUF7551
Motif
Other DBs
NCBI-ProteinID:
QMU07475
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All DBs
Position
1803908..1805755
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AA seq
615 aa
AA seq
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MSTKIKIVPFGGVRENGKNMYAVDVNGGIYILDCGLKYPENELLGIDVVIPDWSYLRENK
DRIVAVFLTHGHADAIGALPYFLSEFNVPVFGSEMTIALAKIDVAAQPKIKDYDDFHVVD
EKTEIDFGDVVVSFFATTHSIPESLGVDLKTDEGQIVYTGDFKFDQTAKPGYQTDYARLG
AIGQNGVLTLLSDSANAENPKMNTSEQELAESIEETFHYRDGRIVVACVASNILRIQQIL
DAAKQTGRKVYLTGQDLEKIVHTAMKLGKLSFDDDLLVTTDQLADLRPDEIVILQTGKTG
EPIKAIQRMANKQDKQLTIQPGDLVYIVTTPSHAMDTTVAQTRDMVYRAGGEVKAISDEL
NSSGHAYKRDLQLMLNLMKPKYLVPIQGEYRLLNAHAQAALELGMAADHIFILAKGDVMT
YQKGEFTLGDSIDVSDTMIDGIGVGDIGNIVLRDRKVLADDGIFIAVVTIDRKKKQIVAA
PKITSRGFVYVKANKDLMQESSDIICKAVQNNLDNKEFDWGHLKQDVREHLSHYLFEQTH
RRPVILPVIMEVNQHHRRTGKKKAAKGAAAKEAPKGHQTKGKKADTKATQKPAKAKTKAH
RHRRHAAATKPDTKA
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaaagattaagatcgtcccgtttggcggagttcgcgagaacgggaagaacatg
tacgccgtggatgttaacggcggaatttatattttggactgcggattgaagtacccggaa
aatgaactgctcggaattgacgtggtgattccagattggagttacttacgagaaaataag
gaccgcatcgtggcggtcttcttgacgcacggtcacgccgacgcaattggggcactgcct
tactttttaagtgagttcaacgtccccgtgttcgggtccgagatgaccattgcgttggcc
aagattgacgtggcggcccaaccaaagattaaagactacgatgattttcacgtggtcgac
gaaaagacagaaatcgattttggtgacgtggtcgtgtccttctttgccacgactcactcg
attccggagtccttaggggtcgatttgaagaccgacgaaggccaaatcgtctacactggg
gatttcaagttcgaccaaacggccaagccaggttaccagaccgattatgcccgcttaggg
gccattgggcaaaatggcgtcttaacgctgttgagtgactcggctaacgcggagaacccg
aagatgaacacctccgaacaagagctggccgaatcgatcgaagagaccttccattatcgg
gacggccgtatcgtggtcgcctgtgtggcgtcaaacattctgcggattcagcagatttta
gatgcggccaagcagaccggccggaaagtgtacttgacgggccaagacctggaaaaaatc
gtccatacggccatgaaattaggcaagctatcctttgatgatgacctgctagtcacgacg
gaccagttagccgatttacgacccgacgaaatcgtcattctccagacggggaagacgggc
gagcccatcaaagctattcagcggatggccaacaagcaagacaagcaactgacgattcag
cctggtgatttggtctacatcgtgactaccccttcacatgccatggacaccacggtggcc
cagacgcgcgacatggtttaccgcgccggtggtgaagtcaaggcgatctccgatgaattg
aactcgtcgggtcatgcttataaacgtgacctacaactgatgttgaacttgatgaagccc
aagtacttagtccctatccagggtgagtaccggttactgaatgcccatgcccaagcggca
ctggagttggggatggcggcggaccacatctttatcctggcgaaaggcgatgtcatgacc
tatcaaaagggtgagttcaccctaggagatagtatcgacgtgagtgataccatgattgat
gggattggcgtcggggacatcgggaacatcgtcttgcgggaccggaaagtgttggccgac
gatggaatcttcatcgccgtggtcactatcgatcgtaagaagaaacaaattgtcgcagca
ccgaaaattacgtcacgcgggtttgtttacgtgaaagctaacaaggacctgatgcaggaa
agttccgatatcatctgcaaggcggttcaaaacaacttggacaacaaggagtttgattgg
ggccacttgaagcaagatgtccgggaacacttgagtcactacctgttcgagcagactcat
cggcggccagtcatcttaccagtcatcatggaagtcaaccagcaccatcgccggactggc
aagaagaaagcggccaaaggagcggcggctaaggaagcccctaagggccatcaaaccaag
gggaagaaggccgacactaaggccacgcagaagcccgctaaggctaagactaaagcgcat
cggcatcgacgacacgcggcagctaccaaaccagacactaaggcttaa
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