Levilactobacillus suantsaii: H3M12_08885
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Entry
H3M12_08885 CDS
T06901
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lsua
Levilactobacillus suantsaii
Pathway
lsua02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lsua00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
H3M12_08885 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsua03021
]
H3M12_08885 (rpoD)
Transcription machinery [BR:
lsua03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
H3M12_08885 (rpoD)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Motif
Other DBs
NCBI-ProteinID:
QMU07578
LinkDB
All DBs
Position
1911812..1912936
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AA seq
374 aa
AA seq
DB search
MAKKTTDQPMFDQKAYNKTVRALIKNTKKAGHITYDELTDQVASPYALDAKQMDKLLETI
SDAGISVVDAKGEPDPRAVKAQKAVTKKELKAASTTTGVKINDPVRMYLKEIGRVSLLTA
DQEVALALRIEKGEEEAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEK
FDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREP
TPEEIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYE
LLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL
RHPSRSKQLKDFLE
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaagaccacggatcaaccaatgtttgatcaaaaggcatacaacaaaacggtg
cgggctttaatcaaaaatacgaaaaaggccgggcacattacgtacgatgaactcactgat
caggtggcgtcaccatacgcgctggatgccaagcagatggataagttattagagacgatc
tccgatgcgggtattagcgtggtcgatgcaaagggtgaacctgacccacgggccgttaaa
gctcaaaaagccgttaccaagaaggaattgaaggcggcctccacgacgaccggggtcaag
atcaacgaccctgtacggatgtacctgaaggaaatcggccgggtcagtctgttgacggcg
gaccaagaagttgccttggcattacgaatcgaaaagggcgaagaggaagccaaacaagaa
ctggctgaagccaacttacggttagtggtttctatcgccaagcgttacgtcggtcggggg
atgcaattcctagacctgattcaagaagggaacatgggtctaatgaaggccgtcgaaaaa
ttcgactaccgtaaagggttcaagttctcgacgtacgctacttggtggattcggcaggcg
attacgcgggccattgctgaccaagcacggaccattcggattccagtgcacatggttgaa
accatcaacaagttgattcggattcaacggcagttactccaagatcttgggcgggaacca
acgccagaagaaattggagctgaaatggatatgccgaccgaaaaggtccgggaaatcttg
aagattgcccaagaacctgtttcgttggaaactccaatcggtgaagaagacgactcgcat
ctgggtgactttatcgaggaccaagacgcgacgagtccggcagaccacgcggcttacgaa
ttgctcaaggaacaactcgaaagcgtgctggatactttaactgaccgggaagaaaacgtt
ttgcggctccggttcggcctggatgacgggcggacccggacgctggaagaagtcggtaag
gtcttcggggttacccgggaacggattcggcaaattgaagccaaggcgttgcggaagtta
cggcacccatcccggagcaaacaattaaaagatttcttagaataa
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