Lactuca sativa (garden lettuce): 111881884
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Entry
111881884 CDS
T05352
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111881884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsv03041
]
111881884
Spliceosome [BR:
lsv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
111881884
Complex C
U5 SnRNP specific factors
111881884
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
EF-G_D2
Dynamin_N
SRPRB
Ras
Septin
Motif
Other DBs
NCBI-GeneID:
111881884
NCBI-ProteinID:
XP_023734035
LinkDB
All DBs
Position
5:226835066..226841240
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AA seq
989 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDQESDREDEDEDLQEKPEDERADSDEENGTAGPNGWMTTGD
DVDMENQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLELPIIKPVRDIKFEVGVKDS
STYVSTQFLLGLSSNPTLVRNVALVGHLQHGKTVFMDMLVEQTHHISTFDQNSEKHMRYT
DTRVDEQERRISIKAVPMSLVLEDSNSKSYMCNIMDTPGHVNFSDEMTAALRLADGAVLI
VDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPRDAYHKLRHTIEVINNH
ITAVSSTAGNVQVIDPTAGNLCFASGSAGWCFTLQSFAKLYVKLHGIPFDANKFASRLWG
DYYYDPATRAFKKKQAASAGAERSFVQFILEPLYKIYSQVIGEHKKSVETTLAELGVTLS
NAAYKSNVRPLLRLACSSVFGSATGFTDMLVNHIPSAKQAAPRKVDHIYTGVKDSRIYKA
MESCDPSGPLMVNITKLYPKSDCSVFDAFGRVYSGELHTGQTVRVLGEGYSPDDEEDMTV
KEVTKLWVYQARYRIPINKAPPGSWVLIEGVDASIMKTATLCNVEYDEDVCIFRALQFNT
LPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDL
RELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGI
VSVDWPRKKLGDFFQTKYDWDLLAARSIWAFGPDKQGPNILLDDTLSSEVDKSLLNAVKD
SIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGTGQIIPTARRVAYSAFLMAT
PRLMEPVYYVEIQTPIDCVPAIYTVLSRRRGHITADVPQPGTPAYIVKAFLPVIESFGFE
TDLRYHTQGQAFALSAFDHWAIVPGDPLDKSIVLRPLEPAPIQYLAREFMVKTRRRKGMS
EDVSINKFFDEAMVVELAQQAADLHLQMI
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggatgacagcttgtatgatgagtttggaaactacattggacctgaaatcgagtctgat
caagagagtgatagagaagatgaagatgaagatctccaagaaaagcctgaagacgagagg
gccgattctgatgaagagaatggaactgctggacccaatggatggatgacaactggcgat
gatgttgatatggagaatcagattgttcttgcagaggacaaaaagtattaccctactgca
gaagaagtctatggtgaagatgtggaaacactagtaatggatgaagatgaacaacccctt
gagctacctataatcaaaccagtaagagacattaagtttgaagttggtgttaaagattca
tccacctatgtgtcaacccaatttctcttaggcctttcatcaaatcccactttggttagg
aatgttgctttggtaggacacttgcaacatgggaagactgttttcatggatatgttagtt
gagcaaacacaccatatttcaacttttgatcaaaacagtgaaaaacacatgagatacact
gatacaagggtagatgaacaagagagaaggatatcaatcaaagcagttcccatgtcactt
gttcttgaagacagcaattcaaaatcctacatgtgtaatatcatggatacccctggacat
gttaacttttctgatgaaatgactgctgctcttaggcttgctgatggggcagttttgatt
gtagatgctgctgaaggcgtcatggtgaatacagagagggcaatccgacatgcaattcaa
gagcgcttacctattgtagttgtgataaacaaggttgacagattaataacagagctcaaa
ctaccacctagagatgcctaccataaactaagacacacaatcgaagtcatcaacaaccac
atcaccgcagtctcgtcgacagctggcaacgtccaggtcatcgatccgacagctggcaac
ctctgtttcgctagtggaagtgcaggctggtgtttcactctccaatcatttgccaaatta
tatgtcaaacttcacggaatcccattcgatgccaacaaattcgcctcaagactttgggga
gattactattacgaccccgccactcgggctttcaaaaagaaacaagccgcaagtgcaggg
gcagaacggtcatttgtccagttcattttagaaccactttacaagatctacagtcaagta
atcggtgaacataaaaagagtgttgagacaacgttagctgaacttggtgtcactttaagc
aatgctgcatataaatcaaatgtaagacccttacttagattagcttgtagttcagttttt
gggtcagctactggatttacagacatgttggtcaaccatatcccttctgctaaacaagct
gcccctcgaaaggttgaccatatttacactggagtcaaagattcaagaatttataaagcc
atggaaagttgtgacccatctggtccactcatggtcaacattactaaactctatcccaaa
tcagattgtagtgtttttgatgcatttggtagggtttatagtggggaacttcacacaggg
caaactgttcgtgttcttggagaagggtattcaccagatgatgaagaagatatgactgtg
aaagaagtgacaaaattatgggtgtatcaagcgcgatataggatacccattaataaagcg
ccacctggctcgtgggttttgattgaaggtgttgatgcttcgattatgaaaactgctaca
ctttgtaatgtggaatatgatgaggatgtgtgtatttttagagctcttcagtttaataca
cttcctgtggtgaaaacagctactgagcctttgaatccaagtgagttgcctaaaatggtg
gaggggttgaggaagattagtaagagttatccacttgcaattactaaagttgaggagtct
ggtgaacatacgattttgggaactggagagttgtatcttgattcgattatgaaagatctc
agggaattgtattcagaagttgaagttaaggtggcagatccagttgtttcattctgtgaa
acagtggtggagtcttcatcaatgaaatgctttgctgaaactcctaacaagaaaaacaaa
attaccatgattgctgagccattggagagaggacttgcagaagatattgagaatggtatt
gtaagtgtggactggcctagaaagaaattaggagacttttttcaaaccaaatatgattgg
gatcttcttgctgcaagatctatatgggcctttggacccgataaacagggtcctaatata
ttattggacgataccctctcgagtgaagttgacaaaagcttgttgaatgctgtaaaggat
tccattgttcaagggttccagtggggtgcacgtgagggcccactttgtgatgagccaatc
cgtaatgttaaattcaaaatagtagatgcgagaattgcaccagagccattacaccgtgga
accggtcaaatcattccaacagctcgacgtgtcgcctattcagcttttcttatggcaaca
ccacgccttatggagcctgtctattatgttgagattcaaacacctatagattgtgttcct
gctatatacacggtgttatctcgtagacgtggacatataactgctgatgtaccccaacca
ggaactccagcctatatagtgaaggcgtttttacctgtaatcgagtcatttggttttgag
acagacttaaggtatcatacccaaggtcaagcatttgccctttcagctttcgatcactgg
gcaattgttcctggtgatccactcgacaaaagcattgtgttaagaccactggagcctgca
cccattcagtaccttgcacgtgaatttatggtcaaaacaaggcgtaggaagggaatgagc
gaggatgtgagcatcaataagttctttgatgaggctatggtggtggagcttgcccaacag
gcggctgatctgcaccttcagatgatctag
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