KEGG   Lactuca sativa (garden lettuce): 111886146
Entry
111886146         CDS       T05352                                 
Symbol
LOC111886146
Name
(RefSeq) nucleic acid binding/RNA binding protein isoform X1
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111886146 (LOC111886146)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lsv03041]
    111886146 (LOC111886146)
Spliceosome [BR:lsv03041]
 Complex A
  U2 snRNP components
   U2 related factors
    111886146 (LOC111886146)
 Complex B
    111886146 (LOC111886146)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    111886146 (LOC111886146)
SSDB
Motif
Pfam: SMN_Tudor TUDOR DUF7907 PolyA_pol PIF6
Other DBs
NCBI-GeneID: 111886146
NCBI-ProteinID: XP_023738141
LinkDB
Position
9:144922883..144926096
AA seq 306 aa
MEGGGEEVSIEELSSNLSTYRQQLQEVRKLLKDDPGNSEYADVEKELVEVIALTEELLAT
AHEEAGNSEVGIGTSADLSPGFHHSGGTFQNDAVSSGMYDGHKLPIGAQVQAVYSEDGEW
YDATIEAFTPNGYLVAYSGWGNKEEVDPANVRAIEEGIVDPLVEAEKEAEATKLALKRKI
AQAATADVDFQSKSLPAKLRIEPEDPEDVKAAKRKKIHAFKSKMRKEQIEVTQNKRQNAW
QQFQTTKGRAKKIGFFSGRKKESIFKSPDDPFGKVGVTGSGKGLTDFQKREKHLHLKGAN
AENTEE
NT seq 921 nt   +upstreamnt  +downstreamnt
atggagggagggggcgaggaggtcagcatagaggagctctcttcaaatctctctacttac
agacaacagcttcaagaggtgaggaagcttttgaaggatgaccctggaaattctgagtat
gctgatgtggagaaagagcttgtggaggtgattgctttgaccgaagaacttttagcaact
gcacatgaagaagctgggaattctgaagtgggaattgggacaagtgctgatttatcccct
ggttttcaccattctggaggtacctttcagaatgatgctgtctcaagtggaatgtatgat
ggtcacaagcttcctattggtgctcaagttcaagctgtttatagtgaagatggcgaatgg
tatgatgcaacgattgaagcgtttacaccaaatggatatttagttgcttacagtgggtgg
ggaaataaggaagaggttgatcctgctaatgttagggctatagaagaaggtattgttgat
cctcttgtggaagctgaaaaggaagcagaagccactaagctagctcttaaacgcaagatt
gcccaagcagctactgctgacgtggacttccagtcaaaaagcttacccgcaaaacttcgg
atcgaacccgaagatcctgaggatgtgaaagctgctaagcggaagaagatacatgctttc
aagtcaaagatgcgaaaggaacaaattgaggttacacaaaataagagacaaaatgcatgg
caacaatttcaaaccaccaaaggtcgtgctaagaagattgggttcttttcggggcggaag
aaggaaagcatatttaaatctcctgatgatccttttgggaaggtgggtgtgactggaagt
gggaaaggtctgacggatttccaaaaaagggaaaaacatttacatctcaagggagctaat
gctgaaaacaccgaagagtaa

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