Lactuca sativa (garden lettuce): 111890722
Help
Entry
111890722 CDS
T05352
Name
(RefSeq) transcription factor PIF3
KO
K12126
phytochrome-interacting factor 3
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv04075
Plant hormone signal transduction
lsv04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
111890722
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
111890722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lsv03000
]
111890722
Transcription factors [BR:
lsv03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
111890722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
CCDC71L
Motif
Other DBs
NCBI-GeneID:
111890722
NCBI-ProteinID:
XP_023742572
LinkDB
All DBs
Position
5:309195706..309199387
Genome browser
AA seq
557 aa
AA seq
DB search
MPLSEFYRSDNETNESPQQKPTDISYIPNDEFVELVWEKGQIMMQGQTSKARKTPVSSNF
LFHTPKVQEKEGLLDVPMSEMGLHPDDDMVPWLNYPLDDYCSDLLPEISGVTGNDHNTLN
VLDKRSSYNHSNKDSHLHNVSRSSHILDPSIRSVVTDIGSSNCRNKPQNLEKMVQKQDSL
LPYSSSTLLNFSHFSRPAAMAKANLLNHGPQKENGFPGRPGLDSGKVGLKPIEEPRCVEK
SSNMVVDANVGKAGVETEKSNEPVGASSSVCSGNSAERASNDLTKNCKRKSHDTEDFECQ
SQDAEEESLGTKTAATSRGGSGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKV
DKASMLDEAIEYLKTLQIQVQIMSMGTGLCMPPMMFPTGMQHMHPHFSPMGIGMGMSYGM
GMGMGMGMGMEMNGGPQGHPHMFPFPPTTQGSRHPIPGLDAGQGIPIPRSSFPVYGHPGQ
GMPMVFPQSPMPGFPMNPAVRQMGSQMESPVVAPTSKDPMTQLSNQSHVANKSLNQSTLV
DQKDEVLDIGCSTAGVD
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgccactttcagagttctatagatctgataatgaaacgaatgaatctcctcaacaaaaa
ccaaccgatatttcatatatcccgaatgacgaatttgttgaattggtatgggaaaaaggt
cagattatgatgcagggtcaaactagtaaagctagaaagacaccagtttcaagtaatttt
ctttttcatacaccaaaagttcaagaaaaagagggtcttttagatgtacctatgtcagaa
atgggattacatccagacgatgatatggtaccttggttgaattatcccctcgatgattat
tgttctgatctgttacccgagatatctggtgtcacaggaaatgaccataataccctcaat
gtacttgacaaaagaagtagttataaccatagtaataaagattcccatctacataacgtt
tcaagaagcagccatattctggatccatctattagatcagtagttacagatataggtagc
agtaattgtagaaataaaccccaaaatcttgaaaaaatggtgcaaaaacaagattcacta
cttccatattcgtcatctaccttgttgaatttttctcatttttcaagaccagctgcaatg
gctaaagctaaccttctgaatcacggaccacaaaaggaaaacgggtttccgggtcgaccc
ggtttggattctggcaaagtgggtttgaaaccaattgaagagccacgttgtgttgaaaag
tcttctaatatggttgttgatgcaaatgtgggtaaagcaggggtagaaacggaaaagagt
aatgagcctgttggtgcttcttcttctgtttgctccgggaatagtgctgagagagcttct
aatgatttgacaaaaaactgtaagagaaagtctcatgataccgaagattttgagtgccaa
agtcaagacgctgaagaagagtctttgggcactaaaacagctgctacttctagaggaggt
tcgggttccaagagaagccgagctgctgaagttcataatttatcagaaaggaggcgaagg
gataggataaatgaaaagatgcgtgcactacaagaactcataccaaattgcaacaaggtg
gataaagcatcaatgcttgatgaggcaattgagtatttaaagacacttcaaattcaagta
cagattatgtcgatgggaaccggattatgcatgccgccaatgatgttcccaaccggaatg
caacatatgcatcctcatttctcccccatgggaatcggaatgggaatgagttacgggatg
ggaatgggaatggggatgggaatgggaatggagatgaatggtggacctcaaggacaccca
catatgtttccattcccgccaactacacaagggtcacgacaccctattcctggactcgat
gccggtcaagggattccgattccgagatctagctttccggtttatgggcatccgggacaa
gggatgccgatggtattccctcaatcaccaatgccggggtttcctatgaatccagctgtt
cgacagatgggatcacaaatggaatctccagttgtggctccaacctcaaaagaccctatg
acacaactatctaatcagtcgcatgttgcaaacaagagtcttaatcagtcgactttggtt
gaccaaaaagatgaagttcttgatatcggatgtagtacagctggtgttgattga
DBGET
integrated database retrieval system
