Lactuca sativa (garden lettuce): 111893703
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Entry
111893703 CDS
T05352
Name
(RefSeq) ABC transporter I family member 19
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111893703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111893703
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111893703
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
nSTAND3
ORC-CDC6-like
SMC_N
AAA_15
AAA
AAA_28
NACHT
Zeta_toxin
AAA_22
AAA_23
AAA_30
AAA_18
SRP54
PduV-EutP
Arf
AAA_24
AAA_7
AAA_5
FtsK_SpoIIIE
AAA_14
T2SSE
AAA_33
AAA_25
cobW
AAA_16
Motif
Other DBs
NCBI-GeneID:
111893703
NCBI-ProteinID:
XP_023745539
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Position
8:complement(141722727..141724671)
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AA seq
275 aa
AA seq
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MEVESSSIKVNGMQFGYSGDNPIFVDFNLKISPRSRCLLVGANGSGKTTLLKILAGKHMV
GGRNVVRVLDFSSFHDTQLVCSGDLSYLGGSWTKTIGSAGDVPLQGDFSAEHMIFGVEGI
DPIRREKLIDLLDIDLQWRMHKVSDGQRRRVQICLGLLHPFQVLLLDEVTVDLDVVARMD
LLEFFKEECEQRGCTIVYATHIFDGLESWATDLAYIQDGDLKRYEKLADLPEMKNSSNLL
SVVESWLRSETKNPKKKPVNSSPFRNSSRHMAYYR
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcgaatccagcagtatcaaagtaaacggcatgcaattcggatacagcggcgat
aatcctatctttgtagattttaacctaaagatttcccctcgatctcgctgtcttcttgtc
ggtgccaacggatctgggaaaaccactttgctgaagattttggcaggaaaacatatggtt
ggtgggagaaatgttgtgcgggtgctagatttttcatcttttcacgacacacagttggtt
tgtagtggtgatttgtcttacttgggtggatcttggactaaaacaattggttcagctgga
gatgtgccactacagggagacttttctgccgaacacatgatatttggagttgaaggaatt
gacccaattagaagagaaaaattgattgaccttttggacatcgatctacaatggcggatg
cataaagtttccgatggacaacgacgtcgagttcaaatctgcctgggcctccttcatcct
ttccaggttcttttgctagatgaagtaacggttgaccttgatgttgttgcaaggatggat
ctgctagagttttttaaggaggaatgtgaacagagaggatgtacgattgtatatgcaaca
cacatatttgatggcctagaatcatgggctacagatctggcatacatacaagatggagat
ttaaaaaggtatgaaaaattggcggatcttccagaaatgaagaattcatcaaacctgtta
tcagtggttgagtcatggctgcgttctgagaccaaaaatccaaaaaagaaacctgttaat
tcttcccctttcagaaactcctccagacacatggcatactacagatga
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