Lactuca sativa (garden lettuce): 111911575
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Entry
111911575 CDS
T05352
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111911575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111911575
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111911575
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_15
AAA_23
AAA
Arf
Zeta_toxin
ORC-CDC6-like
TsaE
AAA_30
AAA_28
Motif
Other DBs
NCBI-GeneID:
111911575
NCBI-ProteinID:
XP_023763095
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Position
3:85729402..85732178
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AA seq
322 aa
AA seq
DB search
MGINDNERNDSNPMVVINKLKFTYPGIDGHPPPGSVPLIEDFSLTLNPGDRCLLVGSNGA
GKTTILKILGGKHMVEPDMVRVLGRSAFHDTSLTSSGDLAYLGGEWRREVAFAGFDVAIQ
MDISAEKMLFGVSGVDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKEFKVLL
LDEITVDLDVLARADLLTFLKKECEERGATIIYATHIFDGLENWPSHIVYVAQGKLQLAL
PMEEVKKMSNLSLMRTVEKWLRKERDEERKRRKERKANGLPEFDRRIDGTRVVNNGWAAG
RLNSTVAGQENFVYSSNRVMRQ
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atggggatcaatgacaatgagcgaaatgatagtaatccaatggtggttatcaataagctc
aagttcacctacccagggatcgacggccatccgcctcctggttcagttcctctcattgaa
gatttctccctcactctcaatcccggtgatcgttgtcttcttgtcggatctaatggcgct
ggaaaaacgacgatactgaagatacttggagggaagcatatggtggagcctgatatggtt
agggttcttggtagatcggcgttccatgacacctctttgacttcttccggcgacctagct
tatcttggtggagagtggagaagggaagttgcttttgctgggtttgatgttgcaatacaa
atggatatttctgctgagaaaatgttatttggagtatcaggggttgatcctcaaagaaga
gctgaactaatcaaggttttagatattgatctttcatggaggatgcacaaggtttctgat
ggtcaaagaagaagagtgcaaatatgcatgggccttctgaaggaatttaaggttcttctt
cttgatgaaattacggttgacctagatgtgcttgcaagggctgaccttttgactttccta
aaaaaggaatgtgaagagcgtggtgctactatcatatatgctacacatatatttgatgga
ctcgagaattggccttcacacattgtttatgttgcccaagggaagctacaattagcattg
cctatggaagaggtcaaaaagatgagtaatttgtctctaatgagaacggtagaaaaatgg
ctgaggaaggagcgagatgaggagaggaagagaaggaaagagagaaaagcaaatggactg
ccagaattcgataggcgtattgatgggacccgcgtggtgaacaatggatgggctgctgga
aggctcaattccactgttgctggtcaagaaaactttgtgtatagttcaaacagggttatg
agacaataa
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