Lactuca sativa (garden lettuce): 111920789
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Entry
111920789 CDS
T05352
Symbol
NRPD1A
Name
(RefSeq) nuclear RNA polymerase D1A isoform X1
KO
K16250
DNA-directed RNA polymerase IV subunit 1 [EC:
2.7.7.6
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111920789 (NRPD1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsv03021
]
111920789 (NRPD1A)
Enzymes [BR:
lsv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111920789 (NRPD1A)
Transcription machinery [BR:
lsv03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol IV and V specific subunits
111920789 (NRPD1A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_2
DUF3223
RNA_pol_Rpb1_3
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
111920789
NCBI-ProteinID:
XP_023772113
LinkDB
All DBs
Position
3:complement(8553711..8561027)
Genome browser
AA seq
1439 aa
AA seq
DB search
MDNEVYVEQQVPSGVLTGIRFKVLSEEDAEKASVKEISVPNEVTDPALGFPNPASQCHTC
GAKDYRTCEGHIGLIKFPFTILHPYFLPEVAQILNKICPGCKNLKKDKAKKTDMESIVQM
PKICKYCDRGFRDVYPPMKFKVSMKDVFGKTAIVVESSRKLISGKSLPPDYWDFVPSDPQ
QEDSFSSFNRRVLTHAQVYQILKDVNPSFLKGSLGKKNKIFLQSFPLTPNCHRVAEFGQN
LTFDERTRAYRKMIGFRGTANELSACVIECIKLSKIRAEKPSFRMNTNGNNDDNPSKMHG
LKYIKEVSLGKRTDFCFRMVCVGDPYIKLNEIGVPHHIAETMLVSEQLNSLNWEKINASC
GLRILQRGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVLINRPPSIHSHSLIALR
VKVLPIDCVLSINPLICSPLRGDFDGDSLHGYIPQSLESRVELAELVSLEKQMVDKQSGK
NLLSLSHDSLTAAHLMLEDGVFFNRPQLQQLQMFCANQKIKLPAIMKKLKHSQMFKSCLW
TGRQLFSLVLDKDFDVGVNGTEIKKGEFVSVLNPSSCLQEGEENLYSYLIKNYEGKEVLE
FLHSFQELLIEWLSMRGFSVSLLDLYLSSDSQTNMNDEVLYGLLEAERQAHGQLLMVDPH
QDFLTGNLPENEAYNELDSNKLCHDQQTSAALSRASASAFKEVFRDIQNLIYNYATKENS
FLSMLKAGSKGNMLKFVQHSMCVGYQHSLVPLSFHFPRDFSCISWNDHKRAVSSFPLGID
RYVPYGVIKSSFLSGLNPLELFVHSVTNRDASFGGHADISGTLFRKLMFFMRDIYIGYDG
TVRSCYGNQLVQFSYGQSESLLEEAECGAPVGSLAACAISEAAYGALDQPISALENSPLL
NLKKVLECGVRKLSGNKTASLFLSQKLKRWTNGFEYGAIDVKNHLEKLLFQDVVSLVTIF
YSPQTGKRAHVSPWICYFRISKEAACRKQLKVQSIINALKLKCTDSIKLKKLKLTLPKLQ
IASKNYPEDDAMNENDENIFITAQIIEDSSSSLDLLQDVVVPYLLETVIKGSSNVKKVDI
LWQDYPKTSKSCRDSSGELYLRVFMSENCERRNFWRFLVDDCIQIMDMIDWERSHPDSIE
DVILAQGIDAARNHFLSTLKSAIADTGKSILPEHLALAADCLSATGEFVPINAKGLSIQR
KQMSASSPFTQACFSNPSDCFVKAAKSGASDKLEGTIDALSWGKVPALGTGSRFDIIFSG
KEHEIDKPEDVYSLLSKSVEIDDEVAVEVNDDNKQQSGNKTPAPLFQYHKFAAEGGTDIM
KMVLRKHISAEDIKRLSKDLKHILYKYDVNHKLSQDDKLVAWKALLLHPRSDEKIGAGPY
EIKVGNHSKHGNTRCFILERVDGTAEDFSYHKCIHHALKLIAPDEARLYESRWLNGKKY
NT seq
4320 nt
NT seq
+upstream
nt +downstream
nt
atggacaatgaagtgtatgtagaacaacaagtgccatctggagttcttacaggcattcga
ttcaaagttctatctgaagaagatgccgaaaaagcatccgtgaaggaaatctctgtacca
aatgaagtaacagaccctgcattggggttcccaaatcccgcatcacagtgtcatacatgt
ggagccaaagattatagaacatgtgaaggtcacataggcttaataaaatttccgttcaca
atacttcatccatacttcttacctgaagtggcacaaattctgaataaaatctgtcccgga
tgtaaaaaccttaaaaaagataaggccaagaaaactgacatggaatccatcgttcaaatg
ccgaaaatttgcaaatattgtgatagaggctttagagatgtttatccacctatgaagttt
aaagtttccatgaaagatgtatttggaaagactgcaattgttgtagaaagttctagaaag
ctcatatcgggtaaaagcttacctcctgattattgggattttgttcctagtgaccctcaa
caagaagattcattttcatcttttaaccgaagagttcttacacatgcacaggtgtatcaa
atactcaaagatgttaatccaagctttctcaaagggtctctaggaaaaaaaaacaagatt
tttctccaaagcttccctttaactcccaactgtcatcgtgtagcagagtttggacaaaat
ttgacatttgatgaacgcacaagagcctatagaaaaatgattggttttcgaggcactgca
aacgaacttagtgcatgtgtaattgagtgcattaaactttcaaagattcgggcagagaag
ccttcatttcgaatgaatacaaatggaaacaatgatgataatccttccaaaatgcatggg
ttaaaatacataaaagaagtaagtcttggaaaaagaaccgatttttgtttcagaatggtg
tgtgtaggtgacccttacataaaactaaacgaaataggcgtccctcatcatatagcagaa
acaatgctagtttcagagcaactgaattcattaaattgggaaaaaataaacgcatcatgt
ggtttaagaatccttcaaaggggcgaaacttttatcagaagaagaggaggtttggttcca
gttagatatggagatcagttaagaattggtgacacggtttatcgacctcttcatgatgga
gacattgttttgattaatcgccctccatctattcattcacattccctaattgcccttcgg
gtcaaagttcttcctattgactgtgttctttcaatcaaccctcttatttgttcccctttg
agaggcgattttgatggagacagtcttcatggctacattcctcaatctttggaatctcgg
gttgagcttgctgaacttgtttcattggaaaaacaaatggttgataaacaaagtggtaaa
aatttattatctttaagtcatgatagtttgactgctgcccatttgatgttggaagatggg
gtttttttcaatcgaccacagttgcaacagcttcaaatgttttgtgcaaatcagaaaata
aaactcccagctatcatgaaaaagttgaagcattctcagatgtttaaatcttgtttatgg
actgggaggcagttgtttagtcttgttttggataaagattttgatgtcggtgtaaatggg
actgaaattaaaaaaggggaatttgtaagtgtgttgaatccttcttcttgtttacaagaa
ggtgaggagaatctatacagctacttgatcaagaactatgaagggaaagaggttcttgaa
tttcttcattcttttcaagaattgcttatcgaatggttgtcaatgagggggtttagtgtt
tctttgttggatctctacctttcttctgattcacaaacgaatatgaatgatgaagttctt
tacgggttgcttgaagcagagaggcaagctcacgggcagctgttaatggtggatccccat
caagattttctgaccggaaacctgcccgaaaatgaagcatacaatgaattggattccaat
aaactgtgtcatgatcagcaaacttcagctgcattaagtcgggcatcagcttctgctttc
aaggaagtgtttcgtgacattcagaatcttatttacaattatgccactaaagagaattcg
tttctttcaatgttgaaagcagggagtaaaggaaacatgttgaagtttgtgcagcatagt
atgtgtgtggggtatcaacattctttggtcccactttccttccactttcctagagacttc
tcttgcatttcatggaatgatcacaaaagggcagtttcgtcttttcctttggggatagac
cggtatgttccttatggtgtgataaagagctcgtttttgtcgggtcttaacccgttggag
ctttttgttcattcggtgacaaatcgggatgcttcgtttggtggacatgcggatatttcc
ggaactttatttcgaaaattaatgtttttcatgcgagatatttacattggatatgatgga
acagttagaagttgttatgggaatcaacttgttcagttttcttatggtcaaagcgagtca
cttttagaggaggctgaatgcggtgctccggtgggttcattggcggcatgtgccatctca
gaggcggcttatggtgccttggatcaaccaatcagtgcactcgagaattcgcctctgtta
aacttgaagaaagtgcttgaatgtggtgtaagaaagcttagtggtaacaaaactgcatca
ctttttttgtctcaaaaacttaaaagatggacgaatggatttgaatatggggctatagat
gttaaaaaccatttggagaagttattgtttcaagatgttgtttcacttgtaaccatattc
tattccccacaaactggaaagcgtgctcatgttagcccttggatttgctattttcgtata
agcaaggaagctgcttgtagaaagcaactaaaagtgcagtcaattatcaatgctttgaag
ttaaagtgcactgactctatcaaattgaagaaattaaaactcactctaccgaaattacag
atagcatccaaaaattatccagaagatgatgcaatgaatgagaatgatgaaaatattttt
attactgctcaaataatcgaagactcgagcagttcattagatctccttcaagatgtagtc
gtgccatatcttctagaaactgttataaaaggatcttcaaacgtgaagaaagtggacatc
ttgtggcaagattatccaaaaacatcaaaatcttgtagagattcttcaggtgaactttat
ttgcgtgttttcatgtctgaaaattgcgaaagaaggaatttctggaggtttttagtggac
gattgtatccaaatcatggatatgattgattgggaaagaagccatccagatagcattgag
gatgtgattttggctcaaggaattgatgcagcaagaaaccattttctctctacactaaaa
tcagccatagcagatactggaaaaagcatacttccagaacatttggctctagctgcagac
tgtttatcagctacaggagaatttgttcctataaatgctaaaggcctatcgattcagaga
aaacaaatgtctgcttcttcaccatttacccaagcatgtttttccaatccttccgattgc
tttgtgaaagcagcaaaaagcggagcatcagacaaactcgagggcacaatcgatgcttta
tcatggggaaaagttcccgccctcgggactggatcaagattcgatattatattttccgga
aaggaacatgaaattgataaaccagaagacgtgtacagtctgttgagcaagagtgtagaa
attgatgatgaggtggcggttgaggttaatgatgataataagcagcaaagtggcaacaaa
actcctgccccgttgtttcagtatcataaatttgctgcagagggtggaacagacattatg
aaaatggtgttgagaaagcatatttcggctgaagatattaagcgattgtctaaagatttg
aagcatatactctacaagtatgatgttaatcacaagttgagtcaagatgacaagcttgtt
gcatggaaagctttgttattgcaccctcgaagtgacgagaagattggagccgggccctac
gaaattaaggtggggaaccactcgaagcatggaaatacacgatgttttattctggaaaga
gtagatggaacagctgaagatttctcgtatcacaaatgcatacatcatgccttgaaattg
attgctcctgatgaagccagattatatgaatcaagatggttgaatgggaagaaatattaa
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integrated database retrieval system
