Ligilactobacillus saerimneri: GTO87_07010
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Entry
GTO87_07010 CDS
T08336
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lsw
Ligilactobacillus saerimneri
Pathway
lsw03030
DNA replication
lsw03410
Base excision repair
lsw03420
Nucleotide excision repair
lsw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lsw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GTO87_07010 (ligA)
03410 Base excision repair
GTO87_07010 (ligA)
03420 Nucleotide excision repair
GTO87_07010 (ligA)
03430 Mismatch repair
GTO87_07010 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lsw03032
]
GTO87_07010 (ligA)
03400 DNA repair and recombination proteins [BR:
lsw03400
]
GTO87_07010 (ligA)
Enzymes [BR:
lsw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GTO87_07010 (ligA)
DNA replication proteins [BR:
lsw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GTO87_07010 (ligA)
DNA repair and recombination proteins [BR:
lsw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GTO87_07010 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GTO87_07010 (ligA)
MMR (mismatch excision repair)
DNA ligase
GTO87_07010 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GTO87_07010 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
LysX_preATP_grasp
HHH
Beta-prop_WDR35_TULP_N
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QLL78354
UniProt:
A0A7H9EKZ4
LinkDB
All DBs
Position
complement(1362247..1364265)
Genome browser
AA seq
672 aa
AA seq
DB search
MDRAQATQVVTELRRQLNQWSHEYYVLDKPTVADHVYDQAYEKLRQLEADFPELVTADSP
TQRVGGQVLAGFTKVQHEIPMLSLGDVFSEDELLAFTNKLQADTGQTFAYNCELKIDGLA
ISLTYEDGVFVKGSTRGNGLIGEDITANLKTIKAIPLRLTEPVSVEVRGECYMPLAAFNQ
LNAERQAQGQEVFANPRNAAAGSLRQLDTKITAQRKLSTFIYYLMEPDRFGITTQSAALK
QLAAWGFKVNPDSRLCQTEDEIKAYVAEYTAKRNQLAYDIDGIVVKSDPFAIHNEVGNTV
KIPKWAIAYKFPPDEQETVVRDITWTIGRTGVVTPTAVMDPVQLAGTKVERATLHNVDYL
QAKDVRIGDTVKLHKAGDIIPEISQVVLAKRPNDTVPYVAPTTCPVCGSDLVHLDDEVAL
RCINPMCPALIKESLTHFASRNAMNIDGLGTKIIDKLYEQGLIKDVAGLYKLTFADLIGL
DKFQEKSANNLLTAIANSKQNSLERLLFGLGIRHVGAKAGQILAEHFGTIAQLMQASSEE
IAAIPNVGQVIADSVVQYFANEHVQILIAELAEVGVNTKYLGPTTAERAQAAATSQFNGL
RVVLTGTLDTIKRADAKKWLEAHGAKVTGSVSKKTDLLIAGHDAGSKLTKAEQLQVKIIN
EQEFIAQMEAEQ
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaccgcgcgcaagcaacacaagtggtaacagagttacgacggcagttaaaccagtgg
agtcatgaatactacgtgctagataaaccaactgttgcggatcatgtatatgatcaggca
tatgagaagttgcgccaattagaagcagactttccagaattagtgacagctgattcaccg
acacagcgagtaggaggacaggtactagctggttttaccaaggttcagcatgaaattccg
atgctgtctttaggagatgtattttccgaggatgagttgttggcttttaccaataagttg
caggcagatacaggacagacttttgcatacaattgtgaattgaagattgacggtttagcc
atctctttaacctatgaagatggagtttttgtcaagggttcaacccggggtaatggtcta
atcggggaagatatcactgccaaccttaagaccatcaaagccatccccctgcggttaact
gaaccagtttcagttgaagtgcggggtgaatgttacatgccactggcagcgttcaatcaa
ctcaatgctgaacgccaggcgcagggacaagaagtatttgctaatccccgtaatgcggct
gcaggttccttacggcagctagataccaaaattaccgctcagaggaaattaagtacgttt
atctattatttaatggagccagatcggttcggaataacaacgcagagtgcagcccttaag
caattagctgcttggggctttaaagttaatccagattcgcggttatgccagacagaagat
gagattaaggcatacgtagccgaatacaccgctaagcggaaccagttagcttacgacatc
gatggaattgttgttaaatctgatccatttgcaatccataatgaagttggcaataccgtc
aaaattcctaagtgggcgattgcttataaattcccaccggatgaacaagaaacggttgtc
cgagatatcacttggacaattgggcggacaggggtagtaactcctactgcagtgatggat
ccagttcaattggctgggaccaaagtggaacgagcaacgttgcacaatgttgattactta
caggcgaaggatgtccgcattggtgatacagtgaaactccataaagcaggagatattatt
ccagagatttcgcaagtggttttggctaagcgcccaaatgatacagtgccatatgtagca
ccaaccacctgtccggtatgtggttcagatttagtgcatttggatgatgaagttgcctta
cggtgtatcaacccgatgtgtccagctttgattaaagagagtttaacgcactttgcttcc
cgaaatgcgatgaatattgatggtttggggactaaaatcattgataaattatatgaacaa
ggtctaatcaaagatgttgctggtttgtataagctcacgtttgctgacctgattggactg
gataagttccaggaaaagtctgctaataatttgctgacagcaatcgctaatagtaagcaa
aattctttagaacgtttgttgtttggactagggatccgtcatgttggtgctaaagctggt
caaattttggcagaacattttggtacgattgcgcaactaatgcaagccagcagtgaagaa
atagctgctattccaaatgtcggccaggtcattgctgatagtgtggttcagtattttgct
aatgagcacgtacaaattttgatagcagaattagcagaggttggggtcaatacgaagtat
cttggcccaacgactgccgaaagagcacaagcagcagctactagtcaattcaacggttta
cgggttgttttgacagggacgctcgatacgattaaacgggctgatgccaagaagtggtta
gaagcccatggtgctaaagtaacagggagtgtgtctaaaaagacggatctattaattgca
ggacatgatgctggtagtaaattaactaaagcagagcagttacaggtaaagataattaac
gaacaagaattcattgcacaaatggaggcagaacagtga
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integrated database retrieval system
