Leptotrichia trevisanii: JMUB4039_1242
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Entry
JMUB4039_1242 CDS
T06733
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lte
Leptotrichia trevisanii
Pathway
lte03030
DNA replication
lte03410
Base excision repair
lte03420
Nucleotide excision repair
lte03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lte00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JMUB4039_1242
03410 Base excision repair
JMUB4039_1242
03420 Nucleotide excision repair
JMUB4039_1242
03430 Mismatch repair
JMUB4039_1242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lte03032
]
JMUB4039_1242
03400 DNA repair and recombination proteins [BR:
lte03400
]
JMUB4039_1242
Enzymes [BR:
lte01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JMUB4039_1242
DNA replication proteins [BR:
lte03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JMUB4039_1242
DNA repair and recombination proteins [BR:
lte03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JMUB4039_1242
NER (nucleotide excision repair)
GGR (global genome repair) factors
JMUB4039_1242
MMR (mismatch excision repair)
DNA ligase
JMUB4039_1242
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JMUB4039_1242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
UPF0758_N
MCM_OB
Motif
Other DBs
NCBI-ProteinID:
BBM57264
UniProt:
A0A510KZZ7
LinkDB
All DBs
Position
complement(1343325..1345433)
Genome browser
AA seq
702 aa
AA seq
DB search
MNLFNQEKNNENENIDSEKNMSFSDVQEKYTKLRNEIEYHNNLYYNEDKPLISDMEYDAL
MRELKQLEQEYPELLKNEENGESSPTEKIGGTASEKFSKVRHRVPMLSLSNTYNISEIED
FDKRIKKIILSENVKEHSKELEYILELKLDGLSISLIYENGVLVQAVTRGDGQVGEDVTE
NIMEIKTIPKKLKKNVSLEVRGEIILPISSFNRINQEREDDGEDVFANPRNAASGTIRQL
DKTIVAERGLDCYLYYLVNAENYGINTHLESIEYIEKLGFKTTKIFEKYTDFKELEKSID
KWHNDRKKLDYETDGLVIKVNNFALYETLGYTTKSPRWAIAYKFPAEQVKTKLMNVTFQV
GRTGVITPVAELEAVNLSGSIVKRASLHNFDEIRRKDIKIGDNVIVEKAAEIIPQVVNVV
FDDRTGQEIEIQEPTNCPVCNSELAHEEGLVALKCHNPLCPEKVKRQIAYFVSRDAMNIS
GLGDKIVEKFIELGKIKTIVDIYSLEKYREELENLEKMGQKSVDNLINSIESSKNRDFSK
VLYALGIPFVGKFNANLLTKTFKNIENLKNQSIENLLAVKGIGDKVAVAVNTFLNDEDNW
KIITDLKNIGLQFAIDETNSEEIADNPIKDKNFLATGKLQKYKRNDIKDIILSKGGNYLS
AVSKNLDFLIAGEKAGSKLEKAEKLGVRVLTEDEFEKEFLEI
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgaatttatttaatcaagaaaaaaataacgaaaatgaaaatatagatagtgaaaaaaat
atgagtttttctgatgttcaagaaaaatatacaaaattgagaaatgaaatcgaatatcat
aacaatctttattataatgaggacaagcctcttatttcggatatggaatatgatgcttta
atgcgtgaattaaaacagcttgagcaggaatatccagaattgctgaaaaatgaggagaat
ggagaaagttcgcctactgaaaagattgggggtactgcaagcgaaaaattttcaaaggta
cgacatcgggtgcctatgcttagtctgtcaaatacttataatatttctgaaattgaggat
tttgataaaagaatcaaaaaaattattttatctgaaaatgttaaggagcattcaaaggaa
ctagagtatattctggaattgaaactggatgggcttagtataagcctgatttatgaaaat
ggagtgcttgttcaggctgtaacacggggagatgggcaagttggggaagatgtaactgaa
aatattatggaaattaaaactattcctaaaaaattgaaaaaaaatgtttcactggaagtt
cgtggagaaattattttgccaatttctagttttaaccgaataaatcaagaacgggaagat
gatggagaagatgttttcgcaaatcctagaaatgcagcttctgggacaataagacagctt
gataagacaattgttgcagaacgtgggcttgactgctatctctattatcttgtaaatgct
gaaaattacgggataaatactcatttggaaagcattgaatatattgagaaacttgggttt
aaaacaacaaaaatatttgagaaatatactgattttaaggaattggaaaaatccatcgat
aaatggcataacgacaggaaaaaacttgattatgaaacagatgggcttgttataaaggta
aataattttgcactttacgaaacgcttggctacacaactaaaagcccacgatgggcaatt
gcctacaaatttcctgctgaacaagtaaaaactaaattaatgaacgtaacttttcaagtt
ggaagaactggcgtaattactcctgttgctgaacttgaagccgtgaatttatcaggttct
attgtgaaaagggcaagtttacacaactttgatgaaattcgcagaaaagatataaaaatt
ggcgataatgttattgtagaaaaggcggcagaaattattccgcaagttgtaaatgttgtg
tttgacgataggactggacaagaaattgaaattcaggagccaacaaattgtcctgtctgc
aatagcgagcttgcacacgaagaaggacttgtcgccttaaaatgccataatccactttgc
cccgaaaaagttaaacgccaaattgcctatttcgtttcccgtgacgcaatgaatatttct
ggacttggtgacaaaattgtcgaaaaatttattgaattaggaaaaataaaaacaatagtc
gatatttactcgttggaaaaataccgtgaagaactggaaaatctggaaaaaatgggacaa
aaaagcgtagacaacttgataaatagcatcgagtccagtaaaaatcgtgatttttcaaaa
gttctctacgcacttggaattccttttgttggaaaattcaatgcgaaccttttaacaaaa
acttttaaaaatattgaaaatctgaaaaatcagtcaatcgaaaatttactggctgtaaaa
ggtattggcgataaagtggcagttgctgtaaatactttcttaaatgatgaggataactgg
aaaattatcacagatttaaaaaatattggattgcaatttgctattgatgaaactaattca
gaagaaatagcagataatccaataaaagacaaaaacttccttgcaactggaaaactgcaa
aaatacaaacgaaacgacataaaagatattatcctgtccaaaggcggaaattatctgtca
gcagtctcaaaaaatctggattttctaatcgctggagaaaaggctggaagtaaactggaa
aaagctgaaaaattgggcgttcgggtgcttacggaagatgaatttgagaaggaatttttg
gaaatttaa
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