Leucobacter tenebrionis: KVY00_02890
Help
Entry
KVY00_02890 CDS
T09454
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ltn
Leucobacter tenebrionis
Pathway
ltn03030
DNA replication
ltn03410
Base excision repair
ltn03420
Nucleotide excision repair
ltn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ltn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KVY00_02890 (ligA)
03410 Base excision repair
KVY00_02890 (ligA)
03420 Nucleotide excision repair
KVY00_02890 (ligA)
03430 Mismatch repair
KVY00_02890 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ltn03032
]
KVY00_02890 (ligA)
03400 DNA repair and recombination proteins [BR:
ltn03400
]
KVY00_02890 (ligA)
Enzymes [BR:
ltn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KVY00_02890 (ligA)
DNA replication proteins [BR:
ltn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KVY00_02890 (ligA)
DNA repair and recombination proteins [BR:
ltn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KVY00_02890 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KVY00_02890 (ligA)
MMR (mismatch excision repair)
DNA ligase
KVY00_02890 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KVY00_02890 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
RNA_lig_T4_1
DNA_meth_N
BRCT_2
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QZY52430
LinkDB
All DBs
Position
complement(600754..603096)
Genome browser
AA seq
780 aa
AA seq
DB search
MNENTQIPTDFDDARAEAERLSGEIERLRRAYYSEATSLVSDAEYDEMFHRLEALERAYP
ELAGQDSPTREVGAAVVSAGFPEHEHAERMLSLDNVFSIDEFREWAEKTRAAAGRDVRWL
SELKIDGLAISLAYRNGVLETATTRGDGRVGEDITENVELIPVIPRELRGDGIPEFFEAR
GEVFLSREDFEALNERQHELQSEFAAEQRAKGVPDERITIRYPEFANARNTAAGSLRQRA
EKKSAAELALMRDRLGRLSLYVHGIGAWQHPDFENQSDAYRLLGEWGLPVSPHSRVFDTI
DEVAAFIADRGEHRHDVEHDIDGIVVKVDELELHAELGETSRAPRWAIAYKYPPEEVHTR
LIDIRVGVGRTGRATPYAVMEPVKVAGSTVRQATLHNQQVVKAKGVLIGDTVVLRKAGDV
IPEVLGAVLELRDGSEVEWRMPERCPECGTPLRPMKEGDIDLRCPNARACPAQVRGRVEH
IGSRGALDIEVLGEITAAALTQPETPSQPPLETEAGLFDLTLDELVPITVIVRDSETGEP
VIDEETGEPRRRSPFQRVVLDYPPEAEGLDAAARRKAGYRKNHRVILPSKDAETFLAELE
KAKTKPLWRLLVALNIRHVGPVAARALGDWFGSLDAIRAASVEELSEVDGVGGIIAESLK
EWFEVDWHREIVDRWAAAGVQWATPGHPGPGAAAADGGVLAGLTVVATGSLEGFTRDGAK
EAIIQAGGKAASSVSKKTDYVAAGPGAGSKLAKAEELGIPVLNAEQFAVLVTEGPDALDL
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgagaacacgcagatcccaaccgacttcgatgatgctcgcgccgaggccgagcgc
ctcagcggtgagatcgagcgcctgcggcgcgcatattactctgaggcgacgagcctcgtc
tccgacgccgagtacgacgagatgttccatcgcctcgaggcgctcgagcgcgcgtacccc
gagctcgcagggcaggacagcccgacgcgcgaggtgggggccgccgtcgtctcggccggg
ttccccgagcacgagcacgccgagcgcatgctcagcctcgacaacgtcttctcgatcgac
gagttccgcgagtgggccgagaagacccgggccgcggcgggccgggatgtgcgatggctc
tccgagctgaagatcgacggcctggcgatcagcctcgcctaccggaacggtgtgctcgag
acggcgacgacgcggggcgacggccgggtcggggaggacatcacggagaacgtcgagctg
atcccggtgatcccgcgcgaactgcgcggcgacggcatccccgagttcttcgaggcgcgc
ggcgaggtgttcctcagccgagaggacttcgaggcgctcaacgagcgccagcacgagctc
cagagcgagttcgcggccgagcagcgggcgaagggagtgcccgacgagcgcatcacgatc
cgctaccccgagttcgcgaatgcgcgcaataccgccgctggcagcctgcgccagcgagcc
gagaagaagagcgcggccgagctcgcgctgatgcgggatcggctggggcggctctcactc
tacgtgcacggcatcggcgcctggcagcaccccgacttcgagaaccagtcggacgcctac
cgtctgctcggcgagtgggggctgccggtgtcgccccactcgcgcgtgttcgacacgatc
gatgaggtggccgcgttcatcgccgatcgcggcgagcaccggcacgacgtggagcacgat
atcgacggcatcgtcgtgaaggtcgacgagctcgagctccacgccgaactgggggagacg
agccgtgccccgcgctgggcgatcgcatacaagtacccgcccgaggaggtgcatacgcgt
ctcatcgacatccgggtgggcgtcggccgcacgggccgggcgacgccgtacgcggtgatg
gagccggtgaaggttgcggggtcgacggtgcggcaggccacgttgcacaaccagcaggtg
gtcaaggcgaagggggtgctgatcggcgacaccgtcgtgctgcgcaaggcgggcgacgtg
attcccgaggtgctcggcgccgtgctcgaactgcgcgacggcagcgaggtcgagtggcgc
atgcccgaacgctgccccgagtgcggaacgcccctgcgacccatgaaggagggcgacatc
gacctgcgctgcccgaacgcgcgagcgtgcccggcccaggtgcgcggtcgggtcgagcac
atcggatcgcgcggggcgctcgatatcgaggtgctcggcgagatcaccgccgcggcgctc
acgcagcccgagaccccgtcccagcccccgctcgagaccgaggccggactgttcgacctg
accctcgacgagctcgttcccatcacggtcatcgtgcgcgacagcgagaccggtgagccc
gtgatcgacgaggagacgggcgagccgcgcaggcgctctccgttccagcgggtcgtgctc
gactatccgcccgaggccgagggactcgatgcggccgcgcgccggaaagcggggtaccgc
aagaaccaccgggtgattctgccctcgaaggacgccgagaccttcttggccgagctcgag
aaggcgaagacgaagccgctgtggcggctgctcgtcgccctgaacatccgccacgtcggc
ccggtcgccgcgcgggccctcggagactggttcggatcgctcgacgccatccgcgcggcc
tcggtcgaggagctctcggaggtcgacggagtgggcggcatcatcgcggagtcgctcaag
gagtggttcgaggtcgactggcatcgcgagatcgtggaccggtgggcggccgccggggtg
cagtgggccacgcccggtcaccccggccccggagcggccgccgccgacggaggcgtgctg
gccgggctcactgtggtcgccaccgggtcgctcgaggggttcacccgagacggggcgaaa
gaagcgatcatccaggcgggcgggaaagcggcctcgagcgtctcgaagaagacggactac
gtggccgccgggccgggcgccgggtcgaagctggcgaaggccgaggagctcggcatcccg
gtgctgaacgcggagcagttcgccgttctcgttacggagggtcccgacgctctagacctc
tga
DBGET
integrated database retrieval system
