Limnobacter thiooxidans: RGQ30_16150
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Entry
RGQ30_16150 CDS
T09704
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lto
Limnobacter thiooxidans
Pathway
lto03030
DNA replication
lto03410
Base excision repair
lto03420
Nucleotide excision repair
lto03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RGQ30_16150 (ligA)
03410 Base excision repair
RGQ30_16150 (ligA)
03420 Nucleotide excision repair
RGQ30_16150 (ligA)
03430 Mismatch repair
RGQ30_16150 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lto03032
]
RGQ30_16150 (ligA)
03400 DNA repair and recombination proteins [BR:
lto03400
]
RGQ30_16150 (ligA)
Enzymes [BR:
lto01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RGQ30_16150 (ligA)
DNA replication proteins [BR:
lto03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RGQ30_16150 (ligA)
DNA repair and recombination proteins [BR:
lto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RGQ30_16150 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RGQ30_16150 (ligA)
MMR (mismatch excision repair)
DNA ligase
RGQ30_16150 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RGQ30_16150 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
Prot_ATP_ID_OB_C
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
BET26114
UniProt:
A0AA86M8K7
LinkDB
All DBs
Position
complement(1768519..1770594)
Genome browser
AA seq
691 aa
AA seq
DB search
MINLDLFDDGGEEGTSADASVEGPKQEMRRLIELLERWEYAYYVLDAPEVPDSEFDQVYR
TLQKLEEDHPTLIQADSPTQRVGGKPSDGFLQVRHRVPMLSLGNAFEDSDVLAFDRRVKE
LADLPADAIVGYTTDPKFDGLAISIHYQDGRFVQAVTRGDGTVGEDVSANVKTIRSLPLR
LKGDRIPASLEVRGEIFMFKKDFAMMNQRQAELGLKVFANPRNAAAGTIRQLDPKIAASR
PLRFYCYGAALDREQLRDLKTQSALMKWLGDMGLPISTLSQTAQGAQGLLNFYRQVGESR
TELPFEIDGVVYKVDSFDLQDQLGYVAKAPRFAVAHKFPPDEVLSRLQNIEVQVGRTGSI
TPVAKLEPVKVGGVVVSSATLHNLDEIQRKDLRVGDQVLVRRAGDVIPEVLPFSGNVRSA
SSIPFVMPTHCPVCNSLVQKEEGESAFRCTGGLVCQAQLTQSIIHFSHRRAIDIEGLGSK
LVEVLVSRQWVKTPADLFRLQFEDLVQLERMGEKSAQNLLDSIHKAKHTTFGRFLFALGI
RHVGEATARDLALHFRDVNKLMSASVDQLLEVNDVGPVVAESIRQFFNEPANQDVVHELI
TLGVCWPEDQVKETDVTHPFFQKTFVLTGSLSQFSRDEASALILARGGKVAGSVSKKTDF
VLAGESAGSKLDKAASLGITILDEQTFQGML
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgatcaacctagacttgtttgatgacggcggggaagagggtacttcagccgatgcatcc
gtagagggtcccaagcaagaaatgcggcgattgatcgagcttctggagcgttgggaatat
gcctattacgttcttgacgcgcctgaagttcccgattcggaatttgatcaggtctaccgc
acgcttcagaagcttgaagaagaccatccaacgctaatccaggctgactcacccacacaa
cgggtaggtggaaagccatccgatggttttttacaggtcaggcatagggttcccatgctt
tccctcggcaatgcctttgaagacagcgatgtacttgcttttgaccgcagggttaaggag
ttggctgatttgcctgccgatgccatcgttggttatacaacagatccgaaattcgatggt
ttggccatttccattcactatcaggatggcaggtttgtgcaggctgtgactcgaggtgat
ggcaccgtgggcgaagacgtttcggccaatgtcaaaaccattcgaagcttgccactcagg
ttgaaaggcgatcgaattcctgccagtctggaggttcgcggtgaaatcttcatgttcaag
aaagatttcgcaatgatgaaccagcgccaagccgaactgggcctgaaagtgtttgccaat
ccgcgcaatgccgcagcaggcacaattcggcaactggatccaaaaattgcagccagtcga
cccttgcggttttattgttacggcgcagcgcttgatcgcgaacaactgcgtgatctgaaa
acccaatcggctctcatgaaatggctgggtgatatgggtttaccgatttcaacacttagt
caaactgcgcaaggtgcgcaaggcctgttgaatttctataggcaggtcggcgagagtcgc
actgaattgccgtttgaaatcgatggtgtcgtttacaaagtggattcgtttgatcttcaa
gaccagctcggttatgtcgccaaggcaccgcggttcgcagtggcccacaaatttccaccg
gatgaggtgcttagtcgtctgcaaaacattgaggtacaggtgggtcgaactggctcaatt
acgccggtggccaaattggagcctgtcaaagtcggcggtgtggtggtgtcttcggctact
ttgcacaatctggatgaaattcagcgaaaagatttgcgcgtaggcgatcaggtactggtc
cgccgcgcaggtgatgtcatcccagaggtcttgccattttctggcaatgttcgcagtgca
agcagtattccttttgtcatgcccacccattgcccagtttgcaattcacttgtacagaag
gaagagggcgagtctgcctttcgttgtactggtgggctggtttgccaggcgcagttgaca
caatccatcattcatttttctcatcggcgcgcaattgacattgagggcttgggcagcaaa
ctggttgaggtgctcgtaagcaggcagtgggtcaaaacgccggctgacttgtttcgcctt
caatttgaagatttggttcaacttgagcgaatgggggagaaatctgctcaaaacttgctc
gatagcatccacaaagccaagcacacaacatttggtcgattcttgtttgcgcttggaatt
cgtcatgtgggcgaagccactgcacgtgacctggcccttcattttcgtgatgtcaacaag
ttgatgtcagccagcgttgaccagctactggaagtcaacgacgtaggcccggttgtggcc
gaatcaattcgccagtttttcaacgaacctgccaatcaggatgtggtgcacgagttgata
acgctcggtgtctgctggcctgaagaccaagtgaaagaaactgatgttacccatcctttt
ttccaaaagacatttgtgttaacaggcagtttgagtcagttcagccgagatgaagcaagt
gcactgatactggctcgtgggggcaaagtggcgggctcagtgtccaagaaaaccgatttt
gtactggctggcgagtctgccggaagcaaactcgacaaagcagccagccttggcattacc
attctggatgaacaaacatttcagggtatgctttag
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