Limnobacter thiooxidans: RGQ30_19460
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Entry
RGQ30_19460 CDS
T09704
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
lto
Limnobacter thiooxidans
Pathway
lto03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RGQ30_19460 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lto03400
]
RGQ30_19460 (nth)
Enzymes [BR:
lto01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RGQ30_19460 (nth)
DNA repair and recombination proteins [BR:
lto03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RGQ30_19460 (nth)
Prokaryotic type
RGQ30_19460 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
BET26445
UniProt:
A0AA86J8C7
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All DBs
Position
2154942..2155574
Genome browser
AA seq
210 aa
AA seq
DB search
MNKEKRTEIFTRFQQANPEPKTELEYSTPFELLAAVLLSAQATDKGVNIATRKLFAVANT
PAAIAALGVEGVENYIKTIGLFRAKAKHLVQTAEILRDRYNGEVPEDREALESLPGVGRK
TANVVLNTAFGHLTMAVDTHIFRISNRTGIAPGKDVLQVEKRLLKLVPQEFMLNAHHWLI
LHGRYVCKARKPECTRCSIVDLCEFKKKTT
NT seq
633 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaagaaaaacgaaccgagatattcacgcgctttcagcaagccaacccggaaccc
aaaacggagctggaatacagcacaccctttgagttactggccgctgttttgctgagtgcc
caagccacggacaaaggtgtcaacattgcaacccggaagctgtttgcagtagccaacacc
ccagccgcgattgccgccttgggggttgaaggggttgaaaactacatcaagaccatcgga
ctgtttcgtgccaaagccaaacacttggtacaaaccgctgaaattcttcgcgatcgatac
aatggtgaagtgcccgaggatcgggaagcgcttgaaagccttccaggtgttggtcgtaaa
acggcgaatgttgtcttgaatacagcgtttggccacctcacgatggctgtggacacacac
attttccggatcagcaaccgcacaggcattgcacccggaaaagacgtgcttcaagtcgag
aaacgtctgctgaaactggttccacaggaattcatgttgaatgcgcaccactggctgatt
ttgcatgggcgctatgtgtgcaaggcgcgcaaaccagagtgcactcgttgtagtatcgtt
gacttgtgcgaattcaaaaagaaaacgacatga
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