Solilutibacter oculi: DCD74_03720
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Entry
DCD74_03720 CDS
T05527
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lue
Solilutibacter oculi
Pathway
lue03030
DNA replication
lue03410
Base excision repair
lue03420
Nucleotide excision repair
lue03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lue00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DCD74_03720 (ligA)
03410 Base excision repair
DCD74_03720 (ligA)
03420 Nucleotide excision repair
DCD74_03720 (ligA)
03430 Mismatch repair
DCD74_03720 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lue03032
]
DCD74_03720 (ligA)
03400 DNA repair and recombination proteins [BR:
lue03400
]
DCD74_03720 (ligA)
Enzymes [BR:
lue01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DCD74_03720 (ligA)
DNA replication proteins [BR:
lue03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DCD74_03720 (ligA)
DNA repair and recombination proteins [BR:
lue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DCD74_03720 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DCD74_03720 (ligA)
MMR (mismatch excision repair)
DNA ligase
DCD74_03720 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DCD74_03720 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
E1-E2_ATPase
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AXA83915
UniProt:
A0A344J4F5
LinkDB
All DBs
Position
765873..767954
Genome browser
AA seq
693 aa
AA seq
DB search
MTDAASRHATLVARIREANHRYYVLDDPQLADADYDGLMRELEALEAAHPELATPDSPTR
RVGDTPSAKFAPVAHVVPMLSLANAFTDDEVREFVARIEKETGDAAPAFSVEPKLDGLAI
SLRYEDGVFVRGATRGDGATGEDVTANLRTVKSIPLRLFGDAPAVLEVRGEVVMPKAAFD
RYNAWALENGQKVLANPRNGAAGSLRQLDPRITAQRPLAFFAYALGQVEGAMLPPTHSGV
LAWLRDLGFPVSAEVAVAHGVEGLLAYYRRIGERRDALPYDIDGVVYKLDRFDQQRAMGF
VSRAPRWAIAHKFPAQEASTTVESIEVNVGRTGAVTPWVLMKPVHVGGVTVTRATLHNAD
QVARLDVRVGDTVIVRRAGDVIPEVVRVVEGERPLDERGEPLHPPYELPTVCPVCGSAIE
RGEGEVVARCSGGLFCPAQRVQALFHFAGRRTMDIEGLGERFAEALVEFGYIETVADLYR
LTVDDFLDMKRRADERDGTIPATVKAGKVADKWAHNLVNAIAASRSTTLERLLFALGIKD
VGESTAKTLARHFGALDPLMAADETTLREVPDVGPVVAAHIAHFFAQPHNREVIAALRER
GVHWPEGAPQRATEGPLAGKTVVLTGGLSAMGRDEAGARLEALGAKVSGSVSKKTSVVVA
GEAAGSKLAKAQELGIEIWDEAALLAFLSSHEG
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgccgcttcccgccatgccacgctcgtggcccgcatccgcgaggccaaccat
cgctattacgtcctcgacgacccgcagctggcggatgccgattacgacgggctgatgcgc
gaactggaagcgctggaagccgcgcatcccgaactcgccacgcctgattcgcccacccgc
cgcgtcggtgacacaccgtccgcgaagttcgcgccagtcgcccacgtggtgccgatgctg
tcgctggccaacgccttcaccgacgacgaagtgcgcgaattcgtcgcccgcatcgaaaag
gaaaccggggatgccgccccggcgttttccgtcgagccgaaactggacggcctcgccatc
agcctgcgctacgaagacggcgtgttcgtgcgcggcgcgacgcgcggcgacggcgccacc
ggcgaggacgtcaccgccaacctgcgcacggtgaagtcgatcccgctgcgcctgttcggc
gatgcgccggccgtgctcgaagtgcgcggcgaagtggtgatgccgaaagccgcgttcgat
cgctacaacgcctgggcgctggaaaacggccagaaagtgctggcgaatccgcgcaacggt
gccgccggttcgctgcgccagctcgacccgcgcatcaccgcgcaacggccgctggcgttc
ttcgcctacgcgctcggacaggtggagggcgcgatgttgccgccgacccattccggcgtg
ctggcctggctgcgcgacctcggtttcccggtcagtgcggaagtcgccgtggcgcatggc
gtcgaaggcctgctggcgtactaccggcgcatcggcgagcgccgcgacgcgctgccttac
gacatcgacggcgtggtctacaagctcgaccgcttcgaccagcaacgcgcgatgggtttc
gtctcgcgtgcgccgcgctgggcgatcgcgcacaaattcccggcgcaggaagccagcacc
accgtcgagtccatcgaggtcaacgtcggccgcaccggcgcggtcacgccgtgggtgttg
atgaagccggtgcatgtcggcggcgtcaccgtcacccgcgccacgctgcacaacgccgac
caggtcgcgcggctggatgtgcgcgtcggcgacacggttatcgtgcgtcgtgccggcgat
gtgattcccgaagtcgtgcgcgtggtcgaaggcgaacgcccgctggatgagcgtggcgaa
ccgctgcatccgccctatgaactgcccaccgtgtgcccggtctgcggctcggccatcgag
cgcggcgaaggcgaggtggtcgcgcgttgcagcggcggcctgttctgtccggcacagcgc
gtgcaggcgttgttccattttgccggccgccggaccatggatatcgagggcctgggcgag
cgtttcgcggaagcgctggtggaattcggttacatcgaaaccgtggccgatctctaccgg
ctcaccgtcgatgatttcctcgacatgaaacgccgcgccgacgagcgcgacggcaccatc
ccggcgaccgtcaaggccggcaaggtcgccgacaaatgggcgcacaatctggtcaatgcc
attgcggccagccgcagcaccacgctcgaacgcctgctgttcgcgctcggcatcaaggat
gtcggcgagtccaccgccaagacgctggcccgccacttcggcgcgctcgacccgctgatg
gccgccgacgaaaccaccctgcgcgaagtgccggatgtcggccccgtggtcgccgcgcac
atcgcgcatttcttcgcccagccgcacaaccgcgaggtcatcgcggccctgcgcgaacgc
ggcgtgcattggcctgaaggcgcgccgcaacgcgcgaccgaaggcccgctcgccggcaag
accgtggtgctgaccggcggcctgtcggcgatgggccgcgacgaagccggcgcgcggctg
gaagcgctcggcgccaaggtcagcggcagcgtgtcgaagaagacctccgtggtcgtggcc
ggcgaagccgccggcagcaagctggcgaaggcgcaggaactcggcatcgagatctgggac
gaagccgctttgctcgccttcctctcatcgcacgagggctga
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