Luteimonas granuli: FPZ22_13160
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Entry
FPZ22_13160 CDS
T06154
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lug
Luteimonas granuli
Pathway
lug03030
DNA replication
lug03410
Base excision repair
lug03420
Nucleotide excision repair
lug03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FPZ22_13160 (ligA)
03410 Base excision repair
FPZ22_13160 (ligA)
03420 Nucleotide excision repair
FPZ22_13160 (ligA)
03430 Mismatch repair
FPZ22_13160 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lug03032
]
FPZ22_13160 (ligA)
03400 DNA repair and recombination proteins [BR:
lug03400
]
FPZ22_13160 (ligA)
Enzymes [BR:
lug01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FPZ22_13160 (ligA)
DNA replication proteins [BR:
lug03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FPZ22_13160 (ligA)
DNA repair and recombination proteins [BR:
lug03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FPZ22_13160 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FPZ22_13160 (ligA)
MMR (mismatch excision repair)
DNA ligase
FPZ22_13160 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FPZ22_13160 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Bep_C_terminal
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QDW67705
UniProt:
A0A518N713
LinkDB
All DBs
Position
2833722..2836070
Genome browser
AA seq
782 aa
AA seq
DB search
MSPTPQQRAAELRRLIDDANYRYHVLDDPELPDVEYDRLLRELAALEAADPSLRTPDSPT
LRVGGAPSGKFATVQHAVPMLSLGNAFSEEEVADFVARIVREGDGAEPVFSVEPKFDGLA
ISLRYEDGLFVRGATRGDGATGEDVTANLRTIKAIPLRLRAPEGMEAPAVLEVRGEVYMP
RAGFEAWNAWALANGGKPLANPRNGAAGSLRQLDPAVTAKRPLAFFAYALGEVEGVDVPD
THSGVLAWLRGFGLPVSPLVERASGLAGVLDYYRRIGEMRDALPYDIDGVVYKVDSHALQ
RALGFVSRAPRWAIAHKFPAQEEATVVESIEVNVGRTGAVTPWVLMQPVHVGGVTVTRAT
LHNADQVARLDVRVGDSVIVRRAGDVIPEVVRVIPERRPDGTTPWRMPGRCPVCGSEIVR
EEGEVVARCSGELVCPAQRVQGLFHFASRRAMDIEGLGERLIQALVDFDQVQSIADLYRL
GVGDFVEMKRRADERDGTTPETVRSGKVATKWAENLVAAIERSRETTLERFLFALGIEHV
GESTAKALAVWFGDLDRIRRAPWPLFKRVPDIGDEVARALGHFFDQPGNQAVIDDLLAAG
VHITDAHPPSPKLREGLTLAQLLADSGIPKLTPLRAKQLADAFPDAGTLLDQERHNFVIA
GLPDEAATSVAEWLSIDANARMLLAAAAMQAELLAALPEDEAAVGPLDGVTVVITGTLEA
MGRDEAKATLEALGAKVSGSVSKKTGFVVAGAEAGSKLARATELGVEVWDEARLLAFLAE
HR
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgtccccgaccccgcagcagcgcgccgccgaactgcgccgtctgatcgacgacgccaac
taccgttaccatgtgctcgacgaccccgaactgccggacgtcgagtacgaccgactgctg
cgcgaactggccgcgctcgaggccgccgatccctcgctgcggactcccgattcgccgacg
ctgcgcgtgggcggtgcgccttcggggaagttcgccacggtgcagcacgccgtgcccatg
ctctcgctgggcaatgccttcagcgaggaggaggtcgccgacttcgtcgcccgcatcgtg
cgcgaaggcgacggggccgagccggtgttctcggtcgagccgaagttcgacggactggcg
atcagcctgcgctacgaggacgggctgttcgtgcgcggcgccacccgcggcgacggcgcc
accggcgaggacgtcaccgccaacctgcggacgatcaaggccattccgctgcgcctgcgc
gcgcctgagggcatggaagcgccggcggtactcgaggtgcgcggcgaggtctacatgccc
cgcgccggtttcgaggcctggaacgcatgggcgctggccaatggcggcaaaccgttggcc
aacccgcgcaacggcgcggccggctcgctgcgccagctcgatcccgcggtcaccgcgaaa
cggccgctggcgttcttcgcctatgcgctgggcgaggtcgagggtgtggacgtgcccgat
acgcattcgggcgtgctcgcctggctgcgcggattcggactaccggtgtcgccgctggtc
gaacgcgccagcggactcgccggcgtgctcgactactaccgtcgcatcggagagatgcgc
gacgcgctgccgtacgacatcgacggcgtcgtctacaaggtcgacagccatgcgctgcag
cgcgcgctcggcttcgtctcgcgggcgccgcgctgggcgatcgcgcacaagttcccggcg
caggaggaggccacggtcgtcgagtcgatcgaggtcaacgtcggccgcaccggtgcggtc
acgccctgggtgctgatgcagccggtgcacgtgggcggcgtgacagtcacccgcgccacc
ctgcacaacgccgaccaggtcgcgcgcctggacgtgcgcgtcggcgacagcgtgatcgtg
cgccgcgccggtgacgtgatcccggaagtggtgcgcgtgatccccgagcgccgcccggac
ggcacgacgccctggcgcatgcccggacggtgcccggtctgcggctcggagatcgtgcgc
gaggagggagaagtggtcgcgcgctgcagcggcgagctggtctgcccggcgcagcgcgtg
cagggcctgttccacttcgcctcgcgccgcgcgatggacatcgagggcctgggcgagcgc
ctgatccaggccctggtcgacttcgaccaggtgcagagcatcgccgacctgtaccgcctg
ggcgtgggcgacttcgtcgaaatgaagcgccgcgccgacgaacgcgacggcaccacaccg
gagacggtgaggtccggcaaggtggcgacgaagtgggcggagaacctggtggccgcgatc
gagcgcagccgcgagaccacgctggagcgcttcctgttcgcgctgggtatcgagcacgtc
ggcgagagcaccgccaaggcgctggccgtctggttcggcgacctcgaccgcatccgccgc
gcgccctggccgctgttcaagcgcgtcccggacatcggcgacgaggtcgcgcgcgcgctc
ggccatttcttcgaccagcccggcaaccaggcggtgatcgacgacctgctggccgccggc
gtgcacatcaccgacgcgcatcccccgtcgccgaagctgcgggaagggctgacgctggcc
cagctgctggcggactccgggatcccgaagctgacgccgctgcgcgcgaagcagcttgcc
gatgcctttccggacgcaggcacgctgctcgaccaggagcgccacaatttcgtcatcgcc
gggcttccggacgaggccgcgacctcggtcgccgagtggctgtccatcgacgccaacgca
cgcatgctgctggcggcggccgcgatgcaggccgaactgctggcggcgctgcccgaggac
gaagccgcggtggggccactggacggcgtgaccgtggtgatcaccggcacgctggaggcg
atgggtcgcgacgaggcgaaggcgacgctggaagcgctgggcgcgaaggtctcgggcagc
gtgtcgaagaagaccggcttcgtcgtcgccggcgccgaggcgggatccaagctggccagg
gccaccgagctcggcgtcgaggtctgggacgaggcacggctgctggccttcctcgcggaa
catcggtga
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