Luteolibacter luteus: HHL09_25820
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Entry
HHL09_25820 CDS
T06562
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
luo
Luteolibacter luteus
Pathway
luo03030
DNA replication
luo03410
Base excision repair
luo03420
Nucleotide excision repair
luo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
luo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HHL09_25820 (ligA)
03410 Base excision repair
HHL09_25820 (ligA)
03420 Nucleotide excision repair
HHL09_25820 (ligA)
03430 Mismatch repair
HHL09_25820 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
luo03032
]
HHL09_25820 (ligA)
03400 DNA repair and recombination proteins [BR:
luo03400
]
HHL09_25820 (ligA)
Enzymes [BR:
luo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HHL09_25820 (ligA)
DNA replication proteins [BR:
luo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HHL09_25820 (ligA)
DNA repair and recombination proteins [BR:
luo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HHL09_25820 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HHL09_25820 (ligA)
MMR (mismatch excision repair)
DNA ligase
HHL09_25820 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HHL09_25820 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
Nlig-Ia
Kinase-PolyVal
PTCB-BRCT
zf_Rg
Motif
Other DBs
NCBI-ProteinID:
QJE99052
UniProt:
A0A858RQ87
LinkDB
All DBs
Position
6279172..6282192
Genome browser
AA seq
1006 aa
AA seq
DB search
MDDDLFNTCFSGPEQRIEELRVELKRIDDLRVELERHNRLYYMEATQEISDAEYDKLFRE
LEELEEKHPEFDNANSPTKRVGGAPLDSFKQVRHLVPMLSIDDVFELKDAEQPAAELIDF
YKRLQKNLGREDIAVTVEPKIDGVAVSLVYRNGSLSYAATRGDGTTGDDITNNVRTIRSI
PLTLTPKSPAPAPIDLSRILPYLPAREQDPSSTGTGRAALESPAESLRERLLADQAASHG
DDLQERIRQEAKSILEWGSEVGRILDPEALFELVKDWRELGGQSEHTVFYIAELARVVKF
TIPPNFGAQGSIAYLANIGACNRLFGDDIRFHGILETEKGPVFVISQPYVDGTEPKLDEV
RGWFEANGFEDAGYNQWKNAAGTRIAGAHEGDLIKTEDGELVPIGLQVLHEGEIIPRVAQ
PAGPVTVPTLLEVRGEIYMPNEAFAAMNAERDEAGLQTFVNPRNATAGALKQLDPKEVAK
RPLAFLAHGLGAYEGPELASETDFHQLLDELGIPRNLPVYFADSEEELRKRVLAIDDIRH
GLGYGTDGAVVKVLHRAERTKLGFTSRAPRWAAAYKFLPEQKETTINNITIQVGRTGVLT
PVAELEPVFVSGTTVSRATLHNEEEMQRKKIYKGARVVIEKAGEIIPAVVRVIDPPADLE
PFRLDLYVEEKCPSCGGPISKEEGFVAWRCTNFECPAQAVSKIRQFTSRKALDIEAVGGI
VAEALVNRGLCRTPLDLFKLDPAELPSLNLGTDTEPRRFGEKNAAKVIEALERAREKPLD
RWLFAMGIRQVGESAAKELARLHEHLTDIAHLKDGEPVCSPILETISAISHKEAEAKHIS
PRNKENLPASDEEKKERDTAYKALKKEADALKKTLAAYTVSPDAGQVVAESVITFFKSEG
GVHVLERLSDLGINPKSENYLPKPAEADLSALPLAGKTFVITGTLSMGRDDMKRHLEAKG
AKVSGSISASTDFLLSGDGGGSKRDKADKLKVPVIDEAELAKMLGE
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgatctcttcaacacctgcttctcggggcccgaacaacgcatcgaggagctg
cgcgttgaacttaagcgcatcgacgatctccgcgttgaacttgaacgccataatcgcctc
tactatatggaggccactcaggagatctccgatgcagaatacgacaagctcttccgcgag
ctggaggaactggaggagaagcatcccgagttcgacaacgcgaactcccccaccaagcgc
gtgggcggtgcgccgctggatagcttcaagcaggtccgccatctggtgccgatgctcagc
atcgacgacgtcttcgaactgaaggacgcggagcaacccgcggccgagctcatcgatttc
tacaagcgcctgcagaagaacctcggccgcgaagacatcgcggtgaccgtggagccgaag
atcgatggtgtggcggtctcgctggtctaccggaatggctcgctatcctatgcagccacc
cgcggcgatggcaccacgggcgatgacatcacgaacaacgtccgtaccatccgcagcatc
ccgctgacgctgacaccgaagtcccctgctccggcgcctattgacctgagccggatcctt
ccctaccttcccgcccgtgagcaggacccatcaagcacaggcactggcagagcggctttg
gaaagcccggcagaaagcctccgcgaaaggctccttgctgaccaggcagcaagtcatgga
gacgatcttcaggaacggatccgacaagaagccaaatccattcttgaatggggatctgaa
gttggtcggatcctcgatccagaagcgctatttgagctcgtcaaagactggcgggaacta
ggcggccaatcggagcacaccgttttctacatcgcggaactcgcgcgggtggtaaaattc
accatcccgccgaacttcggagcgcaaggcagcatcgcgtatctcgccaacatcggagcc
tgcaaccggctcttcggcgacgacatccgctttcacgggatccttgaaaccgagaagggc
cccgtctttgtcatctcccagccttatgtcgatggcacggaaccgaagctggacgaggtt
cgcggttggttcgaagcgaatggcttcgaggatgccggatataaccaatggaagaacgcc
gctggcacccggatcgctggcgcgcatgagggcgatctgatcaagaccgaggacggcgaa
cttgttccgatcggtcttcaagtgcttcacgagggcgagatcatcccccgggtggcacag
cccgcgggtcccgtcacggttcccacgctgctggaagtccgcggtgagatctacatgccg
aacgaggccttcgccgcgatgaatgcggagcgcgacgaagcaggcttgcagaccttcgtg
aacccgcgcaatgccactgctggcgcgctcaagcagctcgatccgaaggaggtcgcgaaa
cgtcccctcgccttcctcgcccatggactgggtgcttatgaaggcccggaattggcatcg
gagaccgactttcaccagttgctcgatgagctcggaatcccgcggaacctgccggtctat
tttgccgattcggaagaggagttgcgcaagagagtgctggcgatcgatgatattcgccac
ggcctcggctacggcacggatggtgcggtggtgaaggtcctgcatcgcgcggagcgcacg
aagctgggctttacctcgcgtgcgccgcgctgggctgcagcctacaagttcctgccggag
caaaaggagaccacgatcaacaacatcaccatccaggtaggccgcaccggggtgctgacg
ccggtggcggagctggagccggtcttcgtttccggcaccaccgtctcccgtgcgacgctg
cacaatgaggaggagatgcagcggaagaagatctacaagggcgcacgggtggtgatcgaa
aaggccggtgagatcatccccgcggtggtcagggtcatcgatcctcccgcggatctggaa
cctttccgtctcgatctctatgtcgaggagaagtgcccatcctgcggcggtccgatttcc
aaggaagagggcttcgtggcctggcgctgcacgaacttcgagtgccccgcgcaggcggtc
tcgaagatccgccagttcacctcgcggaaggctctcgacattgaggccgtcggcgggatc
gtggcagaggccttggtgaaccgagggctctgccgcacgccgctggatctcttcaagctg
gatccggcagagcttccctcgctgaacctcggcaccgacaccgagccgcgccgcttcggc
gaaaagaatgccgcgaaggtgatcgaggcgctggaacgcgcccgcgagaagccgctcgat
cgatggcttttcgcgatgggcatccgccaggtcggtgaatcggccgcgaaggaactcgcg
cgcttgcacgagcacctcaccgacatcgcgcatctgaaagatggcgagccggtctgctcg
ccgatcctcgaaacgatctccgcgatttcccacaaggaagccgaagccaagcacatctcc
ccgcgcaacaaggagaacctgcccgcgagtgatgaggagaagaaggagcgcgacaccgcc
tacaaggcgctgaagaaagaagccgacgccctcaaaaagaccctggcggcctacaccgtt
tccccggatgccggacaggtggtggcggagtcggtgatcaccttcttcaaatcggaaggc
ggcgtgcatgttctggagcgcctgagcgatctcggtatcaacccgaagtccgagaactac
ctgcccaagcccgccgaagccgatctgtccgcccttccgctggcgggcaagaccttcgtc
atcaccggcaccctttccatgggccgcgatgacatgaagcgccacctcgaagcgaaaggt
gccaaggtctccggctccatttccgccagcaccgacttcctcctctccggcgatggcggc
ggatcgaagcgcgacaaggcggacaagctgaaggtgcccgtgatcgacgaagcggaactg
gcgaagatgctcggcgaatag
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integrated database retrieval system
