Luteolibacter sp. Populi: ABWK72_26385
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Entry
ABWK72_26385 CDS
T10555
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lup Luteolibacter sp. Populi
Pathway
lup03030
DNA replication
lup03410
Base excision repair
lup03420
Nucleotide excision repair
lup03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABWK72_26385 (ligA)
03410 Base excision repair
ABWK72_26385 (ligA)
03420 Nucleotide excision repair
ABWK72_26385 (ligA)
03430 Mismatch repair
ABWK72_26385 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lup03032
]
ABWK72_26385 (ligA)
03400 DNA repair and recombination proteins [BR:
lup03400
]
ABWK72_26385 (ligA)
Enzymes [BR:
lup01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABWK72_26385 (ligA)
DNA replication proteins [BR:
lup03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABWK72_26385 (ligA)
DNA repair and recombination proteins [BR:
lup03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABWK72_26385 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABWK72_26385 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABWK72_26385 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABWK72_26385 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH_5
DUF2059
E1-E2_ATPase
Motif
Other DBs
NCBI-ProteinID:
XDA93639
LinkDB
All DBs
Position
complement(6476539..6478686)
Genome browser
AA seq
715 aa
AA seq
DB search
MDELFNTCLMGIEDRILHLRTELERHNRLYYTDAAPEISDADYDKLYRELEELEAKYPEF
DDPNSPTKRVGGAPLDSFQQIKHLVRMLSIDDVFELKDAEVPQAELIDFYKRLQKNLGRE
NVAVTVEPKIDGVAVSLVYRDGVLSYAATRGDGTTGDDITNNVRTIRSIPLSLAGSFPTL
LEVRGEIYMPNEAFAAMNAEREEAGLPTFVNPRNASAGALKQLDPKLVAKRPLAFLSHGL
GAYEGPALASETDLHDLLDSAGIPRNRPVLIAHSLEELLAHVAKIDTDRHALGYGTDGAV
VKVLDRAERDKLGYTSRAPRWAAAYKFLPEQKETLLKDITVQVGRTGVLTPVAELEPVFV
SGTTVARATLHNEEEIQRKDVRIGDTVVIEKAGEIIPAVVKVVLEKRPGDSKPFSLLDHI
GGVCPSCGGPVSKEEGFVAWRCTNFECPAQAVSKIRQFASRKALDIEAVGGIVAEALVNR
GLCRTPLDLFTLDRERLATLNLGSDEEPRRFGEKNAAKVLEALERARHKPLDRWLFAMGI
RQVGESAAKELARLHESLATLANSEILPELRADTRPDAKKRNAKLVPYAISADVAQVVAE
AIIAFFDSEAGKHVLERMTELGIDPRSENYLPRRDEADLSALPLAGKTFVITGTLSMGRD
EMKRFIESKGAKVSGSISAHTDYLLSGEGGGSKRDKAEKLGVKVIGEEELGGLLG
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggacgaactgttcaacacctgccttatgggaatcgaggaccgcatcctgcatctccgc
accgagctggagcgccacaaccgtctctactacaccgatgcggccccggagatttcggac
gccgactacgacaagctctaccgggagctcgaggaactggaggccaagtatcctgaattc
gacgatcccaattccccgaccaagcgcgtcggcggtgcgccgctcgatagcttccaacag
atcaagcatctggtccggatgctcagcatcgacgacgttttcgagctgaaagacgcggaa
gtcccgcaagccgagctgatcgatttctacaagcgtctccagaagaacctcggccgggaa
aacgtggcggtcacggtggagccgaagatcgacggcgtggcggtctcgctggtctatcgc
gatggcgtgctgtcctacgccgcgacccgcggcgacgggacgaccggggacgacatcacg
aacaacgtccggacgatccggtcgataccgctttccctggctggatccttccccaccctg
ctggaagtccgcggggagatctacatgccgaacgaggccttcgcggcgatgaatgcggag
cgcgaggaagccgggctgccgaccttcgtgaacccgcgcaacgccagcgctggtgcactc
aagcagctcgatccgaagctggtcgccaagcgtccgctcgcctttttgtcgcatggcctg
ggtgcctacgaaggcccggcacttgcatcggaaacagacctgcatgacttgttagactcg
gccggcatcccgcgcaaccggccggtgctgatcgcacactcgcttgaagagttgctggcc
cacgttgcaaagatcgataccgaccgccacgccctcgggtacggcacggacggtgcggtg
gtgaaggtcctggaccgtgccgagcgcgacaagctgggctatacctctcgcgcgccgcgc
tgggccgccgcctacaagttcctgcccgagcagaaggagaccttgctcaaggacatcacg
gtgcaggtgggccgcaccggcgtgctgaccccggtggcggaattggagccggtcttcgtc
tccggcaccacggtcgcgcgcgcgacgctgcacaacgaggaggagatccagcgcaaggac
gtgcggatcggggacacggtggtgatcgagaaggcgggcgaaatcatccccgcggtggtg
aaggtggtgctggaaaagcgccccggcgattcgaagcccttctcgctgctcgaccacatc
ggaggcgtctgtccttcctgcggcgggccggtctcgaaggaggaaggcttcgtcgcctgg
cgctgcacgaactttgaatgcccggcgcaggcggtgtcgaagatccggcaattcgcgtcg
cgcaaggcgctcgatatcgaggccgtgggcggtatcgtcgcggaggccttggtcaatcgc
gggctgtgccgcacaccgctcgatctcttcacactcgaccgggagcgcctggccacgctc
aacctcggcagcgacgaggagccgcggcgcttcggcgagaagaatgccgccaaggtcctc
gaggcgctcgagcgcgcccgccacaagccgctggaccgctggctcttcgccatgggcatc
cgccaggtgggtgaatccgcggccaaggaactcgcgcgcttgcatgagtccctcgcaacg
ctggcgaactcggaaatcctgccggagctacgggccgacacccggccggacgcgaagaag
aggaatgcgaagctcgtcccctatgccatctccgcggatgtggcccaggtcgtggcggaa
gccatcatcgccttcttcgattcggaagccggcaagcacgttctggaacgcatgaccgaa
ctcgggatcgatccacgctccgagaactatctgccgcggcgtgacgaggccgatctctcc
gcgctgccgctggcgggcaagaccttcgtgatcaccggcacgctttcgatggggcgcgac
gagatgaaacgcttcatcgaatcaaagggggcgaaggtctccggctccatctcggcacat
accgactatctcctgtccggtgaaggcggcggctcgaagcgcgacaaagcggagaagctg
ggggtgaaggtgatcggggaagaggagctgggcgggctgttgggatga
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