Lutibacter profundi: Lupro_00075
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Entry
Lupro_00075 CDS
T04235
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lut
Lutibacter profundi
Pathway
lut03030
DNA replication
lut03410
Base excision repair
lut03420
Nucleotide excision repair
lut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Lupro_00075
03410 Base excision repair
Lupro_00075
03420 Nucleotide excision repair
Lupro_00075
03430 Mismatch repair
Lupro_00075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lut03032
]
Lupro_00075
03400 DNA repair and recombination proteins [BR:
lut03400
]
Lupro_00075
Enzymes [BR:
lut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Lupro_00075
DNA replication proteins [BR:
lut03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Lupro_00075
DNA repair and recombination proteins [BR:
lut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Lupro_00075
NER (nucleotide excision repair)
GGR (global genome repair) factors
Lupro_00075
MMR (mismatch excision repair)
DNA ligase
Lupro_00075
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Lupro_00075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
Auto_anti-p27
HNOB
RtcB
HypA
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
AMC09757
UniProt:
A0A109RMR9
LinkDB
All DBs
Position
13153..15156
Genome browser
AA seq
667 aa
AA seq
DB search
MSENIELKIKLLRDELRKHNYNYYVLDNATISDYEFDLKLKELEKLEAENPQFFDPNSPT
QRVGGEITKNFTTVIHKNRMYSLANSYSLEDLNDWENRIKKMVDNENISYSCELKYDGAS
INLVYENGKLLRAETRGDGFQGDDVTANVKTIKSIPLVLHDKFIDSFEIRGEIIMPLKGF
YKMNEERIEEGEDPFSNPRNTASGSLKMQDSAEVAKRPLDCLLYQLIAEELPFETHFEAL
MGAKKVGFKIPETIAVCNTINEVFEFIKYWDTRRNKLPYETDGVVVKVNSLEQQEELGYT
AKSPRWAIAYKFKAEQVSTILNEITYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQ
IEKLDIRVGDTVFVEKGGEIIPKIVGVDLTKRSLESKPTKYITNCPDCGTKLVRTEGDAK
HYCPNEYGCPTQITGRIQHFISRKAMNIDGLGSETVELLFKEGLIHNYADLYELNESQII
PLERMAEKSAQNIIAGIENSKKIPFEKVLFALGIRFVGETVAKKLAKHFKSIDNLMNASF
EELVAVDEIGDKIAESVLRFFDNLTNIQIIDRLKNYGVQLIISEDTLKNQTTKLFGKTIV
ISGVFSHFSRNDLKKSIEDNGGKVASSISKKTNFVIAGENMGPSKRLKAESLKIPIISEK
DYINMIS
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaatattgaattaaaaataaaattgcttagggatgaattgaggaagcataat
tataattattatgtactagataatgccacaatttctgactatgagtttgatttaaaatta
aaagaactagaaaaattagaagcagaaaaccctcaattttttgacccaaattctccaact
caacgagtaggaggtgaaattactaagaatttcactaccgtaattcataaaaacagaatg
tattctttggcaaattcatattctttagaagatttgaatgattgggagaataggataaaa
aaaatggttgataatgaaaatatttcatattcatgtgaattaaagtatgacggtgcttct
ataaatttagtgtatgaaaatggaaaacttctacgagcagaaactcgtggtgatggtttt
caaggagatgatgttacggctaatgttaaaacaattaaatctataccgttagttttacat
gataaatttattgatagttttgaaattagaggagaaattataatgcctttaaaagggttt
tataaaatgaatgaagaaaggatagaagaaggtgaagatcctttcagtaatcctagaaat
acagctagcggaagtttaaaaatgcaggatagtgcagaagttgcaaaacgaccgttagat
tgtttattatatcaattaattgctgaagaactaccctttgaaacacattttgaggcgcta
atgggagccaaaaaggtaggttttaaaataccagaaacaattgccgtttgtaatacaatt
aatgaagtttttgaatttattaaatattgggatactagacgtaataaattaccttatgaa
acagatggtgttgttgtaaaagtaaattcattagagcaacaagaagaattaggttataca
gcaaaatcgcctcgttgggccattgcttacaaatttaaagccgaacaagtaagtactatt
ttaaatgaaataacatatcaggttggtagaacaggagctataacaccagttgctaattta
gagccagtacaattggcaggaacaattgttaaaagagcttctttgcacaatgcagatcaa
attgaaaaattagacattagggttggtgatactgtttttgtagaaaaaggaggcgagatt
atacctaaaattgtaggagtagatttaactaaaagatctttagaatctaaaccaacaaaa
tacattacaaattgtccggattgtggcacgaaactagttagaactgaaggagatgctaaa
cattattgcccaaatgaatatggttgtccaactcaaattactggaagaattcagcatttt
ataagtagaaaggctatgaatattgatgggctggggtcagagactgttgagttgctattt
aaggaaggcttaattcataattatgccgatttgtatgaattaaatgaatctcaaattatt
cctttggaaagaatggcagaaaaatctgcacaaaatataattgcaggaatagaaaattca
aagaaaataccttttgaaaaagtgctttttgccttgggtattaggtttgttggagaaact
gtggcaaaaaaattagcaaaacacttcaaatctatagataatttgatgaacgcgtcattt
gaagaactcgttgctgttgatgaaattggggataaaatagcagaaagtgttttgaggttt
tttgataatttgacaaatattcaaataatagatcgattaaaaaactatggtgttcaatta
ataatttctgaagatactttgaagaatcaaaccactaaactttttggtaaaacaattgtt
atatctggggtgttttcacattttagtaggaatgatttaaaaaaatcaattgaagataat
gggggtaaagtagcaagttcaatatctaaaaaaacaaactttgtgatagcaggtgaaaat
atgggacctagtaaacgtttgaaagcagagagtttaaaaattccaattatttcagaaaaa
gattatataaatatgataagttaa
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