Lactobacillus ultunensis: H4B44_08535
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Entry
H4B44_08535 CDS
T07197
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
luu
Lactobacillus ultunensis
Pathway
luu03030
DNA replication
luu03410
Base excision repair
luu03420
Nucleotide excision repair
luu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
luu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H4B44_08535 (ligA)
03410 Base excision repair
H4B44_08535 (ligA)
03420 Nucleotide excision repair
H4B44_08535 (ligA)
03430 Mismatch repair
H4B44_08535 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
luu03032
]
H4B44_08535 (ligA)
03400 DNA repair and recombination proteins [BR:
luu03400
]
H4B44_08535 (ligA)
Enzymes [BR:
luu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H4B44_08535 (ligA)
DNA replication proteins [BR:
luu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H4B44_08535 (ligA)
DNA repair and recombination proteins [BR:
luu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H4B44_08535 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H4B44_08535 (ligA)
MMR (mismatch excision repair)
DNA ligase
H4B44_08535 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H4B44_08535 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
bCoV_SUD_C
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QQP28146
LinkDB
All DBs
Position
complement(1739389..1741392)
Genome browser
AA seq
667 aa
AA seq
DB search
MTEITLDEAKKEAASLRTQLNEWADAYYSKDAPEVEDNVYDQSYNRLLELERQFPEIVTP
DSITQRVGGQIDSDFTKVEHPIPMLSMGDVFSKDELKEFDQRMQKLVGHPVEYNVELKID
GLSLSLEYENGKLVRASTRGNGYVGEDVTANARYIADIPQTLPEPLTTEVRGECYMGKKA
FAKLNEEREEQGLTVFVNPRNAAAGSLRQLDPKVTKRRQLSTFIYTWVNPPEGIISQHQA
IDRMHELGFHTNETGRKLATLDEIFAFIDEYTAKRNSLTYGIDGIVLKIDDLNIEQELGN
TVKVPRWEIAYKFPPEEQETVVRDIVWTVGRTGVVTPTAVMDPVQLAGTTVARASLHNPD
YLNEKGVRIGDTVKLHKAGDIIPEISEVVMAKRPADSEVYHIPDTCPSCGQKLVHLEDEV
ALRCINPSCPAQVEEGITHFASRPAMNIAGLGPKIVKQLIAKDLVHNVADLYHLNADDLA
QLDHFKEKSINNLLTAIDNSKKNSVELLITGLGIDHVGAKAARLIAQKFKNLEKIMSLGV
QDIASIDTIGMTIAESMTTYFAQPEAQKLVEELRESGLNMDYLGEDEEVAPDNPFKDKTV
VLTGKLEHYTRSEFTKKLQALGAKVTGSVSHRTDYVIYGKDAGSKYNKAQQLGVPLLTEE
DAIAQIE
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaattactcttgatgaagctaaaaaggaagcagcttcacttagaacccaattg
aatgaatgggctgatgcgtactattcaaaagatgcacctgaagttgaagataatgtctat
gaccaaagctacaatcgcttgctggaactggaaaggcaatttccagaaattgtaacgcca
gactcaatcacccaacgagttggtgggcagattgatagcgattttactaaggttgagcac
cccattcccatgctttcaatgggagatgtcttttctaaggatgaattaaaagaatttgat
caacggatgcaaaaactagttggtcatcccgttgaatacaatgttgagctgaaaatcgat
ggtttgtcattgtcactagaatatgaaaatggcaagttagtgcgcgcttcaacacgaggc
aatggttatgtgggtgaagatgttacagccaatgcacgctacattgctgatattccgcag
actttgcctgagccgttaaccactgaagttcgtggcgaatgctacatgggcaaaaaagca
tttgccaaattgaatgaagagcgtgaagaacaggggttaaccgtttttgtcaatcctcgt
aacgccgctgcaggttctttgcgtcagcttgatcctaaggtaaccaagagaagacaactt
agtaccttcatctatacctgggtcaacccacctgagggcattataagtcagcatcaagca
attgatcgaatgcatgaattaggttttcatactaatgaaactggtcgaaagctggcaaca
ttagatgaaatttttgcctttatcgatgaatatacggctaagcgtaatagtttgacttac
ggcattgatggtatcgttttaaaaattgatgatctgaatattgaacaagaattaggcaat
accgtcaaagtgccacgttgggaaattgcctataagtttccaccagaagaacaagaaacc
gttgtccgcgatatcgtctggacagtaggaagaaccggagttgtaacgccgactgctgtc
atggatccggttcaattagctggaacaactgttgcacgcgcttctctacacaatccagat
tatttgaatgaaaaaggcgttcgaatcggtgatacggttaagttgcataaagctggcgat
attattccagaaatttctgaagtagtaatggctaaaagaccagcagattcagaagtttac
catatcccggatacttgtccgtcttgtgggcaaaaattagttcacttagaagatgaagta
gcattgcgttgtattaatccgtcttgtcctgctcaggttgaagaaggaattactcacttt
gcttcacgtccagctatgaatattgcaggacttggtcctaagatcgtaaagcaattgatt
gctaaagatttagtgcacaatgtggctgatctttatcatttaaatgctgatgacttagct
caacttgatcactttaaagaaaaatctattaataatttgttgacggcaattgataattca
aagaaaaattctgtagaattattgattactggcttaggaattgatcatgttggggcaaaa
gcagctcgtttaattgcacaaaagtttaaaaatctggaaaagattatgtctctaggggtg
caagatattgcttctatagatacaataggcatgacgattgcggaatcgatgacgacttac
tttgctcagccagaagcccaaaaactggttgaagaattacgtgaaagtggtctgaatatg
gattaccttggtgaagatgaagaagttgcacctgacaatccatttaaggataaaacggtt
gtattaactggtaaattagagcattatacaagaagcgaatttactaagaaattacaggct
ttgggtgctaaagttaccggatcagtttcacacaggactgattatgtgatttatggcaaa
gatgcaggttctaaatacaacaaggctcagcaattaggagttccacttttaacagaagaa
gacgcaattgcacaaattgaataa
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