Lutimonas zeaxanthinifaciens: QZH61_10530
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Entry
QZH61_10530 CDS
T09226
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
luy
Lutimonas zeaxanthinifaciens
Pathway
luy03030
DNA replication
luy03410
Base excision repair
luy03420
Nucleotide excision repair
luy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
luy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QZH61_10530 (ligA)
03410 Base excision repair
QZH61_10530 (ligA)
03420 Nucleotide excision repair
QZH61_10530 (ligA)
03430 Mismatch repair
QZH61_10530 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
luy03032
]
QZH61_10530 (ligA)
03400 DNA repair and recombination proteins [BR:
luy03400
]
QZH61_10530 (ligA)
Enzymes [BR:
luy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QZH61_10530 (ligA)
DNA replication proteins [BR:
luy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QZH61_10530 (ligA)
DNA repair and recombination proteins [BR:
luy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QZH61_10530 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QZH61_10530 (ligA)
MMR (mismatch excision repair)
DNA ligase
QZH61_10530 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QZH61_10530 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
DNA_ligase_A_M
Auto_anti-p27
RNA_ligase
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
WKK65017
LinkDB
All DBs
Position
complement(2312325..2314340)
Genome browser
AA seq
671 aa
AA seq
DB search
MTPVEKKINELREELRQHNYNYYVLDQPTISDYEFDTKLKELQELEKNHPEYEDHNSPTQ
RVGGEITKNFQTVTHKNRMYSLDNSYSKEDILDWEKRIQRILGDVDLEFTCELKYDGASI
NLSYENDRFVRAVTRGDGFMGDDVTANIKTIRSIPLVLKNGKLNSFDIRGEIILPLDGFE
KMNRERIEAGEDPYRNPRNTASGSLKLQDSAEVATRPLDCLLYQVVVADNPFKTHFETLK
YAKSLGFKIPKTIRICKNVEEIMDFLNLWDTKRHELPYETDGVVIKVNSLHFQEELGYTS
KSPRWALAYKFKAEQASTILNEVTYQVGRTGAITPVANLEPVELAGTIVKRASLHNADQI
EKIDLHLKDRVYVEKGGEIIPKIVGVDLDSRAPDALSVQYITHCPDCGTELVRKEGDAKH
FCPNEFGCPTQITGRIQHFVSRKAMNIDGIGAESVELLFKNDLIHNFADLYELRMEQVVP
LERMAEKSALNLINGIEASKNIPFEKVLFALGIRFVGETVAKKLARHYKSIDALMAASFE
ELVEVDEIGEKIAESISLFFDNEGNQILIDRLKNYGLQLSMDESELAGQTELLKGKVFVV
SGVFEIMSRNELKKSIEDNGGKVTGSISKKTNFVIAGANMGPSKKTKAESLGIPIISEQE
YLDMLLDNLWL
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgactccagtagaaaagaagatcaatgaattaagagaagaactccgacaacataattat
aactattatgttcttgatcagccaactatatcagattatgagtttgatacaaaattgaaa
gaacttcaggaactggaaaaaaatcatcccgaatatgaggatcataactctcctacgcaa
agggtgggaggtgagattaccaaaaattttcaaacggttactcacaagaacaggatgtat
tcacttgataattcttactccaaggaagatatacttgactgggagaagagaattcagcgg
attttgggagatgtggacctggaatttacttgtgaattgaagtatgacggggcatcgatc
aatctcagttatgaaaatgaccgatttgtacgggctgttacaagaggagatggttttatg
ggagatgatgttactgccaatattaaaaccattcgctccattcctcttgttttaaagaat
ggtaaactaaattcatttgatatccggggagagattatacttccacttgatggatttgaa
aaaatgaatagagaaagaatcgaagcgggagaagacccttacagaaaccccaggaacact
gccagtggtagtttgaaacttcaggacagcgcggaggtagctaccaggcccctcgattgt
ttgttatatcaggtcgttgtggcggataaccccttcaaaactcattttgagactttaaaa
tatgcgaaatcacttggttttaaaataccaaagacgatacgtatttgtaagaatgtagaa
gaaataatggattttcttaacctgtgggatacaaaaagacatgaattgccctacgaaact
gacggggtggttataaaggtgaactctctgcattttcaggaagagctggggtatacctct
aaatcgcctcgctgggcccttgcctataagtttaaggccgaacaagccagtacaattttg
aatgaagtcacctatcaggtaggaagaacaggggcaataactcctgttgcgaatcttgag
ccagttgaattggcaggtactattgttaaacgtgcctctttgcataatgcagatcaaatt
gaaaaaatagatcttcatttgaaagacagggtttatgtggagaaaggaggcgagatcatt
ccgaaaattgtcggcgtggacctggattccagagcgcctgatgccctttcggttcagtat
ataacgcattgtccggattgtggtaccgagcttgtgagaaaagaaggtgatgccaaacat
ttctgtccgaacgaatttgggtgcccaacgcagataacgggccggattcagcattttgta
agtcgcaaggcaatgaatattgatggtatcggggcagaatcagttgagttattgtttaaa
aatgatctgattcacaactttgctgatttgtatgagttgaggatggaacaggttgttcct
cttgaaaggatggccgaaaaatcagccctaaatcttatcaatggaattgaggcatcaaaa
aatattccttttgaaaaagtgttgtttgctcttggaattcgattcgtgggagagaccgtg
gccaagaagctggcaagacattataaatctattgatgccctgatggccgcgagctttgaa
gagctggttgaggtagatgaaataggagagaagattgctgagagtatttcattgtttttt
gataatgaagggaaccaaatcctgatagacagactaaagaattacggattacagttatct
atggacgagtctgaattggcgggtcagactgaattattaaagggtaaggtgtttgtggtt
tcaggggtttttgagatcatgtcccgaaatgaattaaaaaaatccattgaggataatgga
ggaaaagttacgggttcgatttccaagaaaacgaattttgttatagccggtgccaacatg
gggccaagcaaaaaaaccaaagccgagagtcttggaatcccaattatatcagagcaggaa
tatctggatatgcttttagataatttatggctctaa
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