Limosilactobacillus vaginalis: LV515_07400
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Entry
LV515_07400 CDS
T06850
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lva
Limosilactobacillus vaginalis
Pathway
lva03030
DNA replication
lva03410
Base excision repair
lva03420
Nucleotide excision repair
lva03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LV515_07400 (ligA)
03410 Base excision repair
LV515_07400 (ligA)
03420 Nucleotide excision repair
LV515_07400 (ligA)
03430 Mismatch repair
LV515_07400 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lva03032
]
LV515_07400 (ligA)
03400 DNA repair and recombination proteins [BR:
lva03400
]
LV515_07400 (ligA)
Enzymes [BR:
lva01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LV515_07400 (ligA)
DNA replication proteins [BR:
lva03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LV515_07400 (ligA)
DNA repair and recombination proteins [BR:
lva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LV515_07400 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LV515_07400 (ligA)
MMR (mismatch excision repair)
DNA ligase
LV515_07400 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LV515_07400 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
Nlig-Ia
Hydrolase_6
UPF0758_N
HHH
Motif
Other DBs
NCBI-ProteinID:
QFS34681
LinkDB
All DBs
Position
complement(1488646..1490688)
Genome browser
AA seq
680 aa
AA seq
DB search
MDNQSIPVAQLTLDQAKEEIGPLRKQIAQWGKEYYEQDSPTVEDYVYDRQYQRLVQIEQR
FPELQTPDSPTQQVGGEAESQLTKVRHEIPMLSMGDVFSIEELMDFNHRQQENRDVDVEA
EYNLELKIDGLSLSLVYENGKLIQGSTRGNGNIGEDVTENVRTIKSVPQELPEPLSVEFR
GECYMPKESFAKLNAQREDDGQPIFANPRNAAAGSLRQLDPKVTAKRDLDTFMYYVPEYQ
KLGVTTQAEALDRMRELGFKVNPHNRVVHNRQEIEDYINEYTAKRDQLAYGIDGIVEKVN
DLETEEALGNTVKVPRWEIAYKFPPEEQPTIIRDIEWTVGRTGNVTPTAVMDPVQLAGTT
VSRASLHNPDYLKEKDVRLGDTVYLHKAGDIIPEISKVNLSKRPADSEPYQIPTKCPACD
SELVHLDDEVALRCINPMCPAQIKEGLAHFASRNAMDIAGLGPKIIEQLWNKKLIHDVAG
LYALTEDQLLTLDKFGEKSATNLLTSINNSRNNSVERLLFGLGIRHVGAKAARLIMAHFN
DLDQLMGASADEISAVDGIGPTIGESVETYFANEQVQSLIEELRQSGLNFTYLGSTTTVD
ESSDWNGKRVVLTGKLVEMTRTEAKDWLEVHGAKVTGSVSKKTDIVIAGEKAGSKLTKAQ
ELGVDVWDEQRFSQAMKEEQ
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggataatcaatcaatcccggttgcacaattaacattggatcaggcaaaagaagaaatt
ggtccattgcgaaagcagattgctcaatgggggaaagagtactatgaacaagacagtcct
acggtggaagactatgtttatgatcgtcaataccaacggcttgttcagattgaacaacgc
tttcccgaattgcaaacgccagattcaccaacacagcaagttggtggtgaggctgaaagc
cagctgacgaaggttcggcatgagattccgatgttgtcgatgggggatgtcttctcaatt
gaagagctaatggactttaatcatcgtcaacaggaaaatcgtgacgttgatgttgaggca
gagtataaccttgaattaaagatcgatggcttgtcactatcgctcgtttatgaaaacgga
aagctaatccagggttcaactcgcggaaacggtaatattggcgaagatgttaccgaaaat
gttcggacaataaaatcggttccccaagaacttcccgaaccactctccgttgaatttcgt
ggtgaatgctacatgccaaaagagtcatttgccaaattgaatgcacaacgagaagatgat
ggtcaaccaatttttgctaatccccgaaacgcagcagcaggaagccttagacagttagat
cccaaggttacagccaaacgtgatttggatacatttatgtactatgttcctgaatatcaa
aagctgggagttacaactcaagcagaggctttagataggatgcgtgagcttggctttaag
gttaatccgcataaccgggttgttcataatcgacaagaaatagaagattacattaatgaa
tacacggctaaacgtgaccagttagcctacggaattgacggaattgtggagaaagttaat
gatcttgagactgaagaagcactcggaaatactgttaaggtgcctcgctgggagattgcc
tacaagtttcctccagaggaacagccgacaattatccgtgatattgaatggactgttggc
cgaacaggcaatgtaacgccgactgctgtaatggatccggttcaattggctgggacaaca
gttagtcgtgcttcccttcataatcctgactacttaaaggaaaaggatgttaggttaggt
gatactgtctaccttcataaagcaggcgatatcattccagaaatttctaaagttaatttg
agtaagcgaccggctgatagtgagccatatcaaattccaacaaaatgtcctgcatgtgat
tctgaactagttcaccttgatgatgaagtagctctccggtgcattaacccaatgtgtcca
gcacaaattaaagagggactagcacactttgcttcacgaaatgcaatggatattgctggt
ctcggaccaaagattattgaacagttatggaataagaagctgattcacgatgttgcggga
ctttatgccttaacggaagatcaattattaactttagataaatttggtgaaaaatcagcg
acaaacttattgacatcgatcaataatagtcgtaataattctgtcgagcgccttttattc
ggacttggtattcgtcatgttggcgccaaagcagcacgcctgattatggctcattttaat
gatttggatcagttaatgggagctagtgccgatgaaatttccgctgttgatggaatcggt
ccgacaattggtgaaagcgtagaaacgtattttgctaatgaacaggttcagtcattaatt
gaggagcttcgtcaatccggcctcaactttacgtatcttggctcgactactacagttgat
gagtcgagcgactggaatggtaaacgggttgttttaaccgggaaattagtggagatgacc
cggactgaagccaaagactggttagaagtacatggagctaaagtaacaggtagtgtttcg
aaaaagactgatattgtcattgccggagaaaaagcgggaagcaaactcaccaaggctcag
gagcttggggtcgatgtttgggatgagcaacgctttagtcaggcgatgaaggaggaacaa
taa
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