Lytechinus variegatus (green sea urchin): 121406940
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Entry
121406940 CDS
T11173
Name
(RefSeq) telomerase-binding protein EST1A-like
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121406940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121406940
03032 DNA replication proteins [BR:
lvg03032
]
121406940
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
121406940
mRNA cycle factors
Common to processing body (P body) and stress granule
121406940
DNA replication proteins [BR:
lvg03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
121406940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
121406940
NCBI-ProteinID:
XP_041453749
LinkDB
All DBs
Position
2:71342496..71369024
Genome browser
AA seq
1960 aa
AA seq
DB search
MPPPLMPSLVSRGATGAPGTSYLNIADARSQRSRALYRSTSPRNAKMATTGKVEVVKVTH
NQLKRRVETLKKDAGHERREDPKEKASSQMCAAEKAEKHPTKSRSTKARREKEQRKPDQQ
LYRPGMSRIAKNSSSPGSDLNSSREESPTKPVQDPVNLSEIGSKGDQVCNVHEENQSKEP
APKEEATHGAEPEHSKKQGYERSGTENAQRGGRNSSRNDQVDRQAESGGSHSHCGSRPWD
KQEPVHHREQQGSRRPGREESSKMSRVGKAPSLHNEHADEDTWEIKPEDWEAETTCKSSG
IKLNKGQSAPKHAQSRNRSQSHQQHVLGQNRNDSPPKQVHNRNGKQRPSDDVRNKDRKQN
VDDDPKVPEKRPQEIKSLMGSDWDKEFEQQYQAQHSPKKTDPRHKVTKQKETVEQLPQSR
RASGKANARQDHGPRTSNKKGHSYSEVDSSQHEPKKDLVKSSRQNYASEIQKLRAKKEMM
ERENSSQEEFETVSSAKDLQITVKTGSEVDDRLRVVQEKPAKSYSSGQSRQRIDTDSKRN
EKTDKGPVLTMSGEWEEEVDDLNFHVESMVITNRKFQKKESDKPGRFDRPFQDRTHPHRD
ERCQNEHYDDRERLSERPDIEGTRPPTRDERSHMKNRDEVGYGRSDNRRPKNRNDRFQNK
DYSEKDFERPHNDRRRPPDRDERYQTEYHDDRALNTPDIKETRPSTRDERSQMKNRDEKS
FGRSDNRRPSQRNDRFEDRDLSDREYETPHEDRRRLSERGERQTMQHDSQTFHSGSSNNE
RKEQRNDRNRDKDEPYLSGNDSRYRNREESYRQGHNKQSVDSGRSGKSGSDRQHTNDEDS
KRSGNGRHEDGRKAPDKRYDQDGGRHSGEPQRHHKDQDERRRYHSGGKKDARRHHISVSS
DDSSEIHGRRRGSSEAEESGTKHGGGILRLPGKTEQEKPKPQGNYAPVYDQYYHPPEEHT
DAPVLPDELKAKPKGRTGDQSRLWDPSKPNQKPALQQHQTKHGELHFQDPESDKGESRGE
GTPPATLQENWNSYIPNFPPGFAGMVPPHYGYPPPPPGYSVPTSSWENQPDRTQSGNSPL
PPPYMMQYPPPYGRQPHPLPPGMPYHPGYQNPPHAAMMQEHLSVNRQSAQKLLRDAARCE
TDLFNALSHGISTREMLQQLQGKQQELEQLYEGIILLDLDLCNQYNVEQMLWKNCYYQII
EALRKAIQEQPNGDSYKEDLLDFMHHGTTFYEGVLNKLQSTYHFQLENRTGLDPLHEEPR
RSIKLALLSAQRCMIALGDIARYKEQANETNNYGKARSWYMKAQHLAPRNGRPYNQLAIL
ALYTRRKLDAVYFYVRSLAATNPFLTARESLMTLFEEVRRKVAHKEQEEIEARREMERRR
EQRRKRRRPSQDENRGRKEVWIAHDGKVEGGERMEEEEDEIEKWENLSHLSAAELNKKFV
LSFLNVHGKLFTKTGMEAFGHARDHLLREFKALLDHSPSAILSTRLIQLMAINMFAVANI
SPSGDIPPTAEGCPPLLQQAILLGLHMFALLCLRCCSLLQDHLQEQSGDQSVLSQDLHEL
LPGVKVYADWMMCHPKLWNPPPSSDTTSYCASLDVWSSVAQFLNLVKRVPVPDVKFAVNG
EEDNLEVLLPEDMALSGFVPLMALPLQPVFIQADTSKILANDRVRLDSLTMFGEYLSGQE
TPLISFSVKTDSYVSVAPKAPPSRETNQSYRQEEDHEIGGYDNDDVIVMDSYTEDEPPHG
DGTISRLRERRDSLEKQLRDRELRESHIQAIVESHRSQRLLEIVIKPYYLIPDTNCFIDH
LPAIQRLVLCQRYLMVVPLVVINELDGLARGSREGQYSDPHHAVKVQHGARYAVEYLEEE
FANRNRYLCALTSKGSILDSIRFRSEDADWRGNNDDHILRCCMHYCLDDPRQYMPADKDA
PLQIKREVVLLTDDRNLRVKAIQQNVPVRDIIMFIRWAKV
NT seq
5883 nt
NT seq
+upstream
nt +downstream
nt
atgcctccccccttgatgccgtcactggtatcacgaggggcgaccggagcccccggaacc
tcgtatttaaacattgcagatgccagaagccagcgctcccgcgccctctatcgttcaact
tcaccgcgaaatgcgaaaatggcgacgacgggcaaagtagaagttgtcaaagttacacat
aatcagctgaaaagaagggtggaaactctgaagaaagatgcaggtcatgaaaggcgtgag
gatccaaaagagaaagcatcctcacagatgtgtgcagcagaaaaagcagagaaacatcct
accaagtcacgttctacaaaggcacgtagggaaaaggaacagcgaaagccagatcaacag
ttatataggccaggcatgtcccgtatagcaaagaattcttcatcgccaggaagtgacttg
aattctagccgagaggaatcaccaaccaaacctgtccaggatccagtcaatttgagtgag
attggatccaaaggggaccaggtctgcaatgttcatgaagaaaatcaatccaaagagcca
gccccaaaagaagaggcaacgcatggagctgaacctgaacatagcaagaaacaaggatac
gagaggtcagggacagaaaatgcacagagaggaggcaggaatagcagtaggaatgatcaa
gttgacagacaagccgagagtggtggtagccattcccattgtggatcaagaccatgggat
aagcaggaacccgtgcatcatagagaacaacagggttcacgtagacctggtagagaggag
tcttcaaagatgtccagggttgggaaggcaccatctttacataatgaacatgcagatgaa
gacacctgggaaatcaaaccagaagattgggaagcagaaactacatgtaaatcttcagga
atcaagctcaacaagggtcaaagtgcacctaaacatgcgcagagtcgcaatagaagccaa
agtcaccaacagcatgtgctaggtcagaataggaatgatagcccaccaaaacaagtgcat
aatcgcaatggaaaacaaagacctagtgatgacgttagaaataaggatagaaagcaaaat
gttgatgatgatcctaaagttcctgaaaagagaccacaggaaataaagagtttgatgggt
agtgattgggataaggagttcgagcaacagtaccaagctcaacattcccctaagaagaca
gaccctcgtcataaagttacaaaacaaaaagagacagtagaacagcttccacagagcaga
agagcttcagggaaagctaatgctagacaagaccatggaccaaggacaagcaacaaaaag
ggtcactcatattcagaggtagactcatcacaacatgagcctaagaaagatcttgtcaag
tcatccaggcagaattatgcttcagaaatacagaagctacgagctaagaaagaaatgatg
gaaagagagaattcaagtcaagaagaatttgaaactgtgtctagtgcaaaagatctacag
attacagttaaaacagggtctgaggttgatgacagattgcgggtggtacaggaaaagcct
gccaaaagctactcttcaggtcagtctcggcagaggattgacacagactccaagaggaat
gagaaaactgataagggacctgttttgacaatgtctggtgaatgggaggaagaagttgat
gatcttaactttcatgttgaatccatggtcattactaatcgtaagtttcaaaagaaagaa
tctgataaacctggaagatttgatagaccttttcaagacaggacgcatccacatagagat
gaaagatgtcaaaatgaacattatgatgacagagaaagactgtctgagagaccagatatt
gaaggaacaagaccaccaacaagagatgaaaggtctcatatgaaaaatcgtgatgaagta
ggttatggcagatcggataatagaagaccgaaaaatagaaatgacaggtttcaaaataaa
gattacagtgagaaagactttgagagaccacacaatgataggcggagacctccagacaga
gatgaaagatatcaaactgaatatcatgatgatagagccttaaacacaccagatattaaa
gaaacaagaccatcaaccagagatgagagatctcaaatgaaaaatcgtgatgaaaaaagt
tttgggagatcagataatagaagaccatcacaaagaaatgacagatttgaagatagagat
cttagtgacagagaatatgagacaccacatgaggataggcgaagactttcagaaagaggt
gaaaggcaaactatgcaacatgattcacaaacgtttcattcaggaagctccaataatgaa
agaaaagaacaaagaaatgacaggaatagagataaggatgaaccatacctatcagggaat
gatagtcgatataggaatagagaggaatcttacagacaaggacacaataagcaatctgtg
gattcagggcgatctggtaagtctggaagtgacaggcagcatacaaatgatgaagattca
aaacgatcaggaaatggacgtcatgaagatgggagaaaagctcctgataaaaggtatgat
caagacggaggtcggcatagtggggaaccacaaagacaccacaaagaccaagatgagcgg
aggcgctatcactctgggggtaaaaaggatgcaaggagacatcacatttctgtgtctagc
gatgatagttctgaaatacatgggagaaggagaggcagtagtgaagctgaggagtctggt
actaagcatggagggggtatactgaggctgcctgggaagacagaacaagagaaacctaaa
cctcaaggtaattatgctcctgtgtatgatcagtactatcatcctcctgaggaacatact
gatgcaccagtgcttcctgatgaattgaaggccaagccaaagggacgtactggtgaccaa
agccgcctctgggaccctagtaagccaaatcaaaagcctgctttgcagcagcatcaaacg
aagcatggggaactgcatttccaggaccctgagtcagacaaaggagaatccaggggagag
ggaacaccacctgccaccttgcaagagaattggaattcatacattccaaattttccacct
ggatttgctgggatggtgccgcctcattatgggtacccacctcctccgcctggctactca
gtgcccacttcttcctgggaaaaccaacctgacagaacccagtctggtaattctcccctt
cctccaccttatatgatgcagtatccaccaccctacggtagacaaccccatccactaccc
cctgggatgccatatcacccaggataccaaaatccgccccatgctgccatgatgcaggag
cacctgtctgtgaaccggcagtcagctcagaaactcctacgggatgctgctcgttgtgag
acggacctcttcaatgcattgagtcatggcatctcaaccagggagatgctacagcaactc
caaggcaagcagcaagagctagaacaactctatgagggcatcattctcttagaccttgac
ctgtgtaatcagtataatgtagagcagatgctgtggaagaattgctattatcagattata
gaagccctgagaaaggccatacaggaacaacctaatggagacagctacaaagaagatctt
ctagattttatgcatcatggtactacgttctatgaaggggtgctgaataagctgcaatca
acatatcacttccagttagaaaatcgtaccggtctagatccccttcatgaagaaccaaga
agatcaattaaattggccctattgagtgctcagagatgcatgatagcacttggcgatata
gccaggtacaaagagcaagccaatgagaccaacaactatgggaaagcaaggagttggtat
atgaaagcacagcaccttgctccaaggaatggaagaccttacaatcagctagctatctta
gccttgtatacgagacgtaaacttgatgcagtctatttctatgtgaggagtttagcagct
accaatccattccttacagccagagaaagtttgatgaccttatttgaggaagtcagaagg
aaggttgctcacaaagagcaagaggaaattgaggcaaggagagagatggagagaagaaga
gaacagaggagaaagaggaggaggccatctcaagatgagaacaggggaaggaaagaggtc
tggattgctcacgatgggaaggtggaaggaggagagaggatggaagaggaagaagatgaa
atagagaaatgggagaatctatctcacctttcggctgctgagctcaacaagaagtttgtg
ctaagtttcctgaatgtccatgggaagctcttcacaaaaacagggatggaggcatttggt
catgcgagagatcatctattgcgagaattcaaggcactcttagaccattcaccctcagct
atcctgagtacaagactcattcaactcatggctatcaacatgtttgctgtagctaacata
tctccttcaggtgacatcccccctacagccgagggttgtccacctctcctacaacaagcc
atcctgcttggtcttcacatgtttgccttactatgtttaagatgctgctcactcttacaa
gatcatctacaagagcagagtggagatcagagtgtgttgtctcaggatcttcatgagctg
ctccctggtgtcaaggtctatgctgactggatgatgtgtcatccaaagctttggaaccct
cctcccagctcagatactacctcctattgtgcatcgcttgatgtttggtcttcggtggca
caattcttgaaccttgtaaagcgagtgcctgtacctgatgttaagtttgctgtcaatggt
gaagaagacaacttagaagtattgttaccagaagacatggcactgtcgggctttgtacct
cttatggctcttcctcttcaacctgtattcatccaagctgatacatccaagattcttgcc
aatgatcgtgttcgcctggactcactgaccatgtttggtgagtatttgagtggacaagag
acccctcttatcagcttctcagtcaagacggattcttatgtctcagtagcacccaaggca
ccgccctccagagagacaaatcaaagctaccgtcaagaagaagatcatgagataggagga
tatgacaatgatgatgtgattgtgatggattcctacacggaagatgaaccacctcatgga
gatggtacaatcagtagattgagagaaaggagagacagtttagagaaacaactcagggat
agggaactaagagaatcccatattcaggccattgttgagagtcaccgttcccaacgtctt
ctggagatagtcataaagccttactatcttataccagacactaactgcttcattgatcac
ctaccagctatccagagattggtgttatgtcagagatacctcatggtggtccctcttgta
gtgatcaacgagttggatggcctagcccgtggtagtagggaaggccagtacagtgaccct
caccatgcggtcaaggttcaacatggagctaggtatgctgtagagtatcttgaggaggag
tttgctaacaggaaccgttacctctgtgccttgacctctaaaggaagtatcctggacagt
attaggttcaggagtgaggatgctgattggaggggtaacaatgatgaccatattttgaga
tgctgtatgcattactgtttagatgatccaaggcaatatatgccagctgataaagatgct
cctctgcagattaagcgagaggttgttctgttgacggatgaccggaatctgagggtgaag
gctatccagcagaacgtcccagtcagagacatcatcatgttcatcagatgggccaaggta
tga
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integrated database retrieval system
