Lytechinus variegatus (green sea urchin): 121416199
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Entry
121416199 CDS
T11173
Name
(RefSeq) short transient receptor potential channel 3-like
KO
K04969
transient receptor potential cation channel subfamily C member 6
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
121416199
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lvg04040
]
121416199
Ion channels [BR:
lvg04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121416199
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GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
PKD_channel
Ank
Ank_5
Ank_3
YVC1_C
Motif
Other DBs
NCBI-GeneID:
121416199
NCBI-ProteinID:
XP_041465629
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All DBs
Position
1:complement(51895834..51910802)
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AA seq
1196 aa
AA seq
DB search
MRRRAYDSFLVTSGAKEHDLLSKDELNFLQAAEIGDLPTVKQMLENDDLAPKLLRCTDYK
DRTALEVSTENEHLEIVEFLVQKGGRKLDIQAIQESLMLAISKGYLRITQALLNHPVHQR
SKDKFRLGSLTNYYQRKNNSKFEQDVTPLMLAAHCNEIDIIRLLLNRGDTIKKPHNSLCQ
CTYCSNKKQFDPLKHSLAGFNTYRALASPAFIALTSPDPILTAFLLSQELASNARIEKEF
KNEYRDLARQCKEFASDLLDMCQNSEEVRTILNNEATTLDESEHGRGNNWLKSEVGDEAS
SRAPTLSRLKLAIKLRQKQFVAHSHCQHELATLWYRNFPSWRLMSLPKKVFVNVLIVLGL
PFFTLCYYLAPYSKLGQFVSSPLVKFILYSASYFVFLLVIFIESLYAQTYTNWYHDQKEK
RLTSLLRERLNTTTNTCLSIFPGLEKEDYIIQLRFFELTPLEIVILIFLMGFLWGEIKQL
WAEGLRAYLASIWNWIDIAMLNLYLASCTLNILSVTRARRAIDFFMTNVNAPCLYKHGDD
SVAQAHFYFLQRERSMWHNDDPVFVSEALYALANVLSFSRLSYILPVSEFLGPLQISLGR
MLGDILRFAVVFIVVFLAFFCSMFNLYYSYEDSKFGNFGQAFLTLFWALFGLGNPADPRL
HHNSTSNATVSMTAGGKGGYLITESFGTMLYMIYYVVMGLVMLNMLIAMMSNSFQEINSE
QDVEWKFARAQLWMSYFEKGATIPVPFNIIPSPKSFYHLYKWVVKQLVRCRRGPPSRDSN
QVPLGERRNGVFNILNRLELRRDESTHESITKGIIKRYLFKLQRDKENDEVNEGELDEIK
NDISSLRFELMEQLRAPKTPSAPLAPSSAPAFTFSFPSATTGSSSTKGTDISHELNALKA
KVTELTKHIETLTNATLSQQVVAYNSSTRGSHDRIGHTDLGTRCGSANSLRTLDSDCSRF
EYDLQGRRNSSPRVLDIGDIPLSYDDSERQQDVIVRRRNRSGRRTSADSGDTRRESLQRA
YDVTDIVGYGDHDKQHNNNNPRQGYGGRGVGHTSDNRRQSKPAQSGRSGMSHEPDKRSIS
RTLSRGSIHVGFDLETRHDPILRVVDEDATRMDFEPDMSSSHNVIHTAPDMSGGSQSRDF
ESSKEVGVSYDFDEHHADGGLRSGVRNGNTRARYTQEQDTLGVPTGHYNIAFSLDA
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgagacggagggcatacgactccttcctagtcacatcgggggccaaggagcacgacctc
ctatccaaggacgagctcaacttcctccaagctgccgagatcggcgacctccccaccgtc
aagcagatgctggagaacgacgacctcgcgcccaagttgctcaggtgtacggattacaag
gatagaacagctctggaggtttcaacggaaaatgaacatcttgagattgtggaattcctg
gtccagaaaggaggccgaaagctcgacatccaagccatccaagaatctcttatgttggcc
atcagcaaggggtacctacggatcacacaagccttgttgaaccatcccgtccaccagcga
agcaaggataagttcagactaggaagtcttaccaactactaccaaagaaagaataatagc
aagtttgagcaggacgtcactcctctgatgctagcggcccactgcaacgaaatcgacatc
atcaggttgcttctcaaccgcggcgacaccatcaagaagccccacaactccctctgtcaa
tgcacctactgcagcaacaagaaacagttcgacccgttgaaacactccctggctgggttc
aacacctaccgtgccctggccagtccggcgttcatagcactcaccagcccggatcccatc
ctcaccgccttcctgctgagtcaagaactcgcatccaacgcccggattgagaaagaattc
aagaatgaatatcgagaccttgcccgacaatgcaaggagtttgcctcggatcttctcgac
atgtgtcaaaattcagaggaggtacggaccatcctgaacaacgaggcaacaaccctggac
gagtctgaacatggaagaggaaacaactggttgaaatccgaggtcggggatgaggcttct
tcacgagctccaaccctatcccggctaaaactggcaataaaactccgacagaaacagttc
gtagcgcattctcactgtcagcacgagctagctacactgtggtatcgtaattttcccagc
tggcgattgatgagcttgcccaagaaggtttttgtcaatgtcctgattgttctcggacta
ccgttctttaccctgtgttactatctggctccatatagcaagcttggccagttcgtaagc
agtccgcttgtcaagttcatcctgtattccgcctcctatttcgtcttcctcctcgtcatc
ttcatcgaatccctctacgcccaaacctacaccaactggtaccatgaccagaaggaaaag
agactaacctctctcttgcgagagcgactcaacacaaccaccaatacgtgtctctcaatc
ttccccggtttggaaaaagaggattacattattcagcttcgtttcttcgagctcacgccc
ctagaaattgttatactgatattcctcatggggtttctatggggtgagatcaagcagcta
tgggctgagggtcttcgcgcttacttggcatcgatatggaactggatcgatatcgccatg
ttgaatctctacctggcgtcatgcacactcaatatacttagtgtgaccagggcccgtcgg
gccatagatttcttcatgaccaatgtcaatgcgccttgtttgtataagcacggtgacgac
tcggtagcacaagcgcatttctatttcttgcaacgagaacgttcaatgtggcacaacgat
gatcccgtctttgtctcagaagccctgtacgccctggccaacgtgctcagtttctcacgc
ctctcctacatcttaccggtcagcgagttcctcggtccactccagatctccttgggtcgg
atgctgggcgacatcctccgcttcgccgtcgtcttcatcgtcgtcttcctggcgtttttc
tgctccatgttcaatctatattactcttacgaagattcaaagttcggcaattttggtcag
gcgttcctgaccctgttttgggcactgtttggccttggcaaccctgcagaccccaggctc
caccacaacagcaccagcaacgccacggtgtcgatgacggcgggcggtaagggcgggtac
ctgatcaccgagtcgtttgggaccatgctctacatgatctactacgtggtcatgggtctt
gtcatgctgaacatgctgatcgccatgatgagcaattcctttcaagagatcaatagtgaa
caagacgtagaatggaaattcgctcgggctcagctctggatgtcttactttgagaagggc
gccaccatccctgttcctttcaacattatcccatcacctaaatcattctatcatctttac
aagtgggtggtaaaacagttggtgaggtgtagacgaggccctccatccagggacagtaac
caagtaccattaggagaacggagaaatggtgttttcaatatcttgaatagactagaacta
cggcgagatgaaagcacacacgagagtattaccaaaggcataatcaaaagatatctcttc
aaattacagagggataaagaaaatgatgaagtgaatgaaggagaactggatgaaatcaag
aatgacatatcaagtcttcgatttgagctcatggagcagctacgggccccgaagacgccc
agtgcgccactagctccctccagtgctccagcatttaccttctcatttccgagtgcgacg
actggttcatcgtccacaaaaggtacagacattagccatgagcttaatgctctcaaggca
aaggtgacagaactgactaaacacatagagacccttaccaatgccacattatcacagcaa
gtagttgcttacaacagtagtaccagaggtagtcatgataggataggccatacagatctt
ggtacgcgttgtggcagcgcaaatagcttgaggacattggatagcgattgcagtaggttt
gagtacgacctccaaggcagacggaactcatctccaagagtgttagatattggggacatc
ccgttgagctatgatgacagtgagcgtcagcaggatgtgattgtcagacgtcggaatcga
tcaggacgaagaacaagtgccgatagtggtgacacacggcgcgaatcgttgcaaagggcg
tacgatgtgaccgacattgttgggtatggagatcatgacaagcaacataacaataacaac
ccaagacaaggttatggtggcagaggggtaggtcacacaagcgacaatagacgacaatca
aaaccagcacagagtggcaggagtgggatgtcacatgaacctgataaaagaagcatatcc
aggacactaagccgtggtagcatccatgtaggtttcgaccttgagacacgccatgacccc
atcttgcgcgttgttgatgaagacgcgacaaggatggactttgaacctgacatgtcttca
tcccacaatgtgatccacacagcacctgacatgtcagggggcagccaatcaagggacttt
gagagcagcaaagaggttggtgtatcttatgactttgatgaacaccatgctgatggagga
ttaagaagtggtgtgaggaatggaaacacaagggctcgttacacacaagaacaagacacc
ctcggtgtgccaacaggacattataacattgcattctctttagatgcctga
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