Lytechinus variegatus (green sea urchin): 121420282
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Entry
121420282 CDS
T11173
Name
(RefSeq) short transient receptor potential channel 4-like isoform X1
KO
K04966
transient receptor potential cation channel subfamily C member 3
Organism
lvg Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lvg04040
]
121420282
Ion channels [BR:
lvg04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121420282
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank_5
Ank
Ank_4
Ank_3
Rx_N
DUF445
Motif
Other DBs
NCBI-GeneID:
121420282
NCBI-ProteinID:
XP_041470792
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All DBs
Position
8:28061694..28099009
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AA seq
1042 aa
AA seq
DB search
MVSKKQSNMVTIQVTDADDSIEIVDEIEEPQERRGNDESISEDGRVCEERNDTDGAGRNG
GKGTEESCPNGSNVEMEVQTDQNWRKNFKVRVEAGAPMFRQVSLRYARTHKKTKPEDMSA
FTHEERFLAAVRDGDVSFVEDALDRIETQPLDVNCTDRNGRTAIAVAITRGNLLILKLLL
KSNVAIGDSLLRAVDTQFFEAVKLILKHSESFGDRQMEIVNCRSETDDYHPEITPIILAC
HHNNFEIIDILLKYGALVPSPDSGDAERTAKHTLQRSVGTLNIYRALSSQFYISKTSKDP
MGDAFLLCHRLRQMSGLEYEFRAEYLELADTIEEYAADLLGQARDSKELNKIMTHGPNKI
KAGVTEDGATLQKVFMAISYTQKKFVAHPHCQQLLIKRFFGSLAYTRDWPLWKQLLISLL
IMIGYPFISIVYILMPAKKVITFVDTPFVKFLMSVGSRLTFLIFLLIATSASGTTSEDPQ
KQWTRIPVPLLFLILAWLVGMTWAALIGIYRQGIKTFITNGQNILEFCILLLFWTALTLY
LVAYLQTRETVVDNIARRDIDLDQLREFLQNETVPELRDYIDEVVRNASLEIQANQNANL
TELIQSVVRKTCNETTTEVPPMMTTTPVYSGRVSLPPDHPSVLADAFFAVATVIAFLRLL
SLTVSSQLVGPLQISLGGMLFDIVKFILVFIIVWFAFALGLNQIYQTYEEYTYQQCSEDP
DAACDYGAFASVGLSMLTLFWALFGLESLSIIQLESGINHYFTEAVGTFLFGLYLMFAVV
VMLNALIAMMSNTYTRVEENSDTEWKYARAQMWVSFLQPGNTTPPPFNVFPAIRDWAAMC
RKLGSSCCRRSKDENGNSKKRDRSQEEYTVTVKQLVDRYILDRTTLGADSEANVTRSDIM
AIRNDIAVFRYETFKSLKASEVSFTNLKGTLGSIQTQLDKVDIMNTKTTELDQHVRDVRR
RTTEIHGTVDDIMENLTNTLTKVRGRGAQGRAVRQKMGSSGLRVTEEHQEDDAASETPSS
SSLHESASSSHSTRDDGEDTET
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggtctcaaagaagcaatcgaacatggtgaccattcaggtaacagatgctgacgatagc
attgaaattgtggatgaaatcgaagagccccaagaaagacgaggtaatgatgaaagcata
agcgaagatggaagggtctgtgaagagcgaaatgataccgacggcgctggacgcaatgga
gggaaggggacggaagaatcatgtccgaacggtagtaacgtggaaatggaagtccagact
gaccaaaattggagaaagaatttcaaagtgagggtggaggcgggcgccccaatgttcagg
caagtttctctccgttacgcacgtacgcataaaaagacaaagcccgaagacatgtcggcg
ttcacccatgaggagcggtttttggccgccgtgagggacggcgatgtatcttttgtagaa
gatgccctagataggatcgaaacccaacctctcgatgttaactgcacggataggaatgga
agaactgcgattgctgtggccatcacccgagggaaccttctgatcctgaaactgcttcta
aagagtaatgtagccattggggattcgctgctccgcgctgtggatactcagttcttcgag
gcagtgaagcttattctcaagcactcggaatcttttggggatcgacagatggagatagtc
aactgtcgttcagaaacggatgattatcatcctgaaatcactcccattattctagcttgc
caccataacaactttgagatcatcgatattcttttgaagtatggtgccttggtgcccagc
ccagattccggcgacgcagagcggactgcaaagcacacactacagcggtcagtggggaca
ctcaacatctacagagctttatccagtcagttctacatctcaaaaacaagcaaggaccca
atgggtgatgctttcctcctgtgtcaccgtctacgtcaaatgagtggtctcgagtatgag
ttcagagccgagtacctggagcttgctgacacgatagaagagtacgctgccgaccttctt
ggccaggccagagattccaaggagctgaacaagatcatgacccatggaccgaataagatc
aaagcaggagttacggaggatggcgccactctacagaaggtcttcatggcaatatcttac
acccagaaaaagttcgtggcacatcctcattgccagcaacttcttatcaaacgtttcttt
ggctcattggcttatacacgagattggcctctatggaaacagcttctgattagtctcctg
ataatgattggctatccgttcatctcgatcgtctacatccttatgccagcgaagaaggtc
ataacctttgttgacaccccgtttgttaagtttctgatgagtgtcggatcccggttaacc
ttcctcatatttctcctcattgcaacctcggcttccggaaccacatccgaagatccgcaa
aagcaatggacccggatacccgtaccgctactcttccttattttagcctggctagttgga
atgacatgggcggccctcatcggaatctatcggcaagggatcaagacatttatcacgaat
ggtcagaacattcttgaattctgcatcctccttctcttctggaccgccctcacattgtat
ctagtggcttatctacagactcgagaaactgtcgttgacaacatcgcccgtcgtgacatc
gatctcgaccagctcagggaatttctgcagaacgagaccgtgcccgagcttcgggactac
atcgatgaggtcgtccgtaacgccagcctcgagattcaagccaaccagaatgctaatctt
actgagttgatacagtccgtagtcagaaaaacttgtaatgaaactaccacagaagtgcca
ccgatgatgactaccacacctgtgtattctggtagagtgtcactgccgcctgaccatcca
tccgttctagctgatgccttctttgctgtagctacggtcattgccttccttcggctacta
agcttaacggtttcctcgcagttggtcggcccccttcagatctcgttgggcggtatgctg
ttcgacatcgtcaagttcatcctcgtcttcatcatcgtctggttcgccttcgctctcggt
ctcaaccagatctaccagacctacgaggagtacacctaccagcagtgcagtgaagacccc
gacgccgcctgcgactacggcgcattcgccagtgttggattgtcaatgttaaccctcttc
tgggccctgttcggattggagtccctcagcattatacagcttgaaagcggcattaatcac
tacttcaccgaggctgtgggaacgttcctcttcggtctctatctcatgtttgctgtggtc
gtcatgctcaatgctctcattgctatgatgagcaatacctatacgagagtcgaggaaaat
tcggatactgaatggaaatacgcccgagcacagatgtgggtgagcttcctccaacctggg
aacacgacgcccccaccgttcaatgtgtttcccgccattcgagactgggcagcgatgtgt
aggaaactcggtagttcgtgttgccgcaggagtaaggatgaaaatggcaattccaagaag
cgagacagaagccaagaggagtacacagtgacggtcaaacaacttgttgaccggtatatc
ttagatcgtacgacgctcggtgcggattcggaggctaacgtgactcgatctgatatcatg
gctattaggaacgatattgctgttttcagatacgagacattcaaatctctgaaggcatcg
gaagtatccttcacaaacctcaaaggcacgctgggcagcatccaaacacaactcgacaag
gttgacatcatgaacactaaaacaaccgagctggaccaacacgtccgcgatgtccgacga
cgcacgacggagatccacggcaccgtggacgacatcatggaaaacctcacgaacactctc
actaaggttcgcggacggggcgcccaagggagagctgtacgacagaagatgggatcaagt
ggtctaagggtgactgaagaacatcaagaagacgatgcagccagtgagacgccctcttcg
tcgtctctacacgaatcagccagctcatcgcactcgactcgggacgacggtgaagacacc
gaaacatga
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