Lytechinus variegatus (green sea urchin): 121422348
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Entry
121422348 CDS
T11173
Name
(RefSeq) short transient receptor potential channel 3-like
KO
K04969
transient receptor potential cation channel subfamily C member 6
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
121422348
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lvg04040
]
121422348
Ion channels [BR:
lvg04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121422348
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
PKD_channel
Ank
Ank_3
Ank_5
YVC1_C
Arfaptin
Mer2
Motif
Other DBs
NCBI-GeneID:
121422348
NCBI-ProteinID:
XP_041473271
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Position
1:73094962..73111632
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AA seq
913 aa
AA seq
DB search
MPQKKRLLSRGLSRLIGAEEAEFLNAVSHGNLAYVKSTLGVGGDENGAIKALLHLKDTKD
RTALEIATENEHYDIVVFIVEVHGCFLGVNDIHESLMLAISKGYLNITQVLLDHPCFDEK
KNRAMQTLGRHETFYDRNYHSKFARDVTPVMMASMYNEVDILRLLLERGDDVVKPHHPLC
GCTTCLNRKEFDPLMHSLSIINAYRALCSEAYISLTSEDPILTAFLLSKELNNLCKTEKE
FKNEYKELIKKCKTFASNLLDMCQNTEEVKTILKQTAISETEVRDPQIGHPPRALGGKVE
NEKEDENALPRLEMAIEYHQKQFVAHPHCQHHLATLWYQGFPQIRLMQSWMRVFILPLFL
PLLPIAVIIYLIYPKGKFGNFMRSPIIKFINQSVMYMVFLLLMFMESVTEGTSRLDLENI
EDVLLASNSCAPYIDDIGVQHDIKAKIRDSGSAIEFFLFIMVLGLIWQEVKQIWREGLHT
YVSSIWNWIDLAMLNLLLSSLVIVFMSMVFTMEAQRFFLTDGSCEALANGSPTAEGHFYF
LTGDRTAWENNDLNLIGEGLFAMANVLSFSRLSFILPASEFLGPLQISLGRMMGDISRFA
AVFFVVFLAFFCAMCNLYWYYPDNSSFGSMSNALTTLVWALFGLGDTSNTSCPDDYPDCG
HASTEVFGVLLYSSYMGIMVIVMLNMLIAMMSTSFDEINNDEDVEWKFSRSKLWLSYFER
GATLPVPFNLIPSPKTIIKNFMWASHKLIKTNSSKRIASHRPISQSNLRKAVRRNVTSHE
DLMKKVVKRYLFKLQRAHDTDEIDEGELEEIKNDISSFRFDVLEELGNISSKVDSKLYAN
SKMNNVKPAREKGGPSMAKIPENGEDAGKIDDDFEKVADEITQKMDVLSEMIIAVKCQFS
QILEKGKLEPSAQ
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgccgcagaagaagcgtttactctcccgaggtctatctcggctgattggtgctgaggag
gccgagttcctcaacgctgtcagtcacggtaacctggcttacgtaaagtcgacactgggt
gtgggcggtgacgaaaatggagctatcaaggcattgctccatctcaaagataccaaagac
cgcaccgccctcgagatcgcaacggagaacgagcactatgatatcgtggtgttcatcgtc
gaggtccacggctgtttcctgggtgtcaacgacatacacgaaagtctgatgcttgccatc
tctaagggatatcttaacattactcaggtgttgttggatcatccttgtttcgatgagaag
aaaaatcgcgcgatgcaaacattaggtcgtcacgagaccttctacgatcgtaactaccat
tctaagtttgcacgtgatgtcacacctgtcatgatggcctccatgtacaatgaggttgat
atccttcgcctccttcttgaacgaggtgacgatgttgtcaagccccaccatcctctctgc
ggatgtacaacctgtttgaaccggaaggagtttgatcctctcatgcactccttgtcaatc
atcaatgcataccgtgcactatgtagtgaagcatacatctcattgacaagtgaagatccc
atccttacagcttttctcttgagcaaagaactcaacaacctttgtaaaacggaaaaggag
ttcaagaatgagtacaaggagctgatcaagaaatgcaagacgtttgcctcgaatttactc
gatatgtgtcagaatacagaagaagttaaaaccatcttgaaacagacggccatttcagaa
accgaggttagggatccgcaaattggtcatcctccacgtgcacttggaggcaaagtcgaa
aatgaaaaggaagacgagaacgccctcccacggttggaaatggccatcgaatatcatcag
aaacagtttgtagcgcatccccactgccagcatcatcttgccacgttgtggtaccaaggt
tttcctcagatcagactgatgcaatcctggatgagagtatttatcttgcccctcttctta
cccctcctaccaatcgccgtcatcatctatctcatctaccccaaaggaaagtttggtaat
ttcatgcggagcccaattatcaagttcattaaccagtcggtgatgtacatggtgttcctt
ctgcttatgttcatggagtcggtaacggaaggtacatcccgtcttgatttggaaaacatt
gaggacgtactcctggcatcgaattcctgcgcaccttacatcgatgatattggtgtccaa
cacgacatcaaggcaaagatacgggacagcggcagcgccatcgaatttttccttttcatc
atggttctggggttgatttggcaggaggtgaagcagatatggcgggaaggcctccatacc
tacgtcagttcgatctggaactggattgatttagccatgttgaacctgctcctgagttca
ctcgtaatcgtattcatgtcgatggtttttaccatggaagcccagcgattctttttaact
gatggcagttgcgaggctctggctaacggcagtcctacggcagaggggcacttttatttc
ctcactggtgatcggacggcatgggaaaacaacgacctcaacctaatcggggaagggctg
ttcgctatggccaatgtcctgagcttctcccgactctcgttcatcctcccagccagcgaa
ttccttggacctctccagatctctttgggaaggatgatgggggatatctctcgattcgcc
gcagtcttctttgtggtcttcctggccttcttctgtgccatgtgtaatctgtattggtac
tacccagacaacagctcgtttggatcaatgtcgaacgccttgacgacactggtgtgggct
ctgtttggtctcggtgacacgtctaatacttcctgcccggacgactaccccgactgcgga
catgcatctaccgaggtgtttggggttctactgtatagctcctacatgggtatcatggtc
atcgtcatgctcaacatgctcatcgctatgatgtccacttccttcgacgagatcaataac
gatgaagatgtggaatggaagttttctcgttctaaactttggctgtcctattttgagcga
ggggccacgttacccgttccattcaatcttataccttcaccaaagaccatcatcaagaat
ttcatgtgggcaagccataaactgatcaaaacgaactcaagcaaacgaattgcatctcac
cgaccaatctctcagagtaacttgcgaaaagctgtgagacggaacgtaacgagccacgag
gatctcatgaagaaagtagtcaagagatacctattcaagttacaacgagcacatgatact
gacgaaatcgacgaaggagagctcgaagaaatcaagaatgatatatctagcttccggttc
gatgtactagaggagctgggtaatatctcatcgaaggtcgattccaaattgtatgcaaac
tctaaaatgaacaacgtcaaaccggcccgggagaagggtggaccctctatggcgaagata
ccggaaaacggagaagatgctggaaagattgatgatgattttgagaaagttgccgatgag
atcactcagaagatggatgtcttgtcagaaatgataatagcagtgaaatgccaattctcc
cagatactcgagaaagggaaattggaaccgagtgctcaatga
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