Lytechinus variegatus (green sea urchin): 121422448
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Entry
121422448 CDS
T11173
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
121422448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lvg03400
]
121422448
Enzymes [BR:
lvg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121422448
DNA repair and recombination proteins [BR:
lvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
121422448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
RNA_ligase
DNA_ligase_IV
mRNA_cap_enzyme
LIG3_BRCT
PTCB-BRCT
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
121422448
NCBI-ProteinID:
XP_041473437
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All DBs
Position
1:73486542..73527787
Genome browser
AA seq
931 aa
AA seq
DB search
MASTDQKDDASTSAAGVTAVTTGPTVASQIPFGEICGFLEKVQKKKGSDAKKNLFKDFLG
KWRAFHKQLHAKNPKTTDNFYPAMRLLLPQLERERMAYGIKEHTLAKLYIDILGLAKEST
DARKLLNYRAPTAKQEAGDFASVAFFVLRNRCPERGSLTIKDVNDNLDSIALNNATKKKD
LVKQSLLTLLRKTSAIEQKWLIRMIMKEMKVGLSQQSILGTFHPDAEDFFNVTNSLAKVC
SDLSDPSVRLNEIAISVFSPFSPMLGERAKITQVERIMEHKSFLIETKLDGERMQLHKEG
DKYMYFSRRSHDYSGSFGKSPMEGSLTPYIANCFKSNVHSCILDGEMCAYNADTKAFISK
GENFDIKSLRDDEDVQVCYAVFDVLLVNDTKLANRPLKERLSYLPKVFTVVEGRMVLVER
RDAATKAEVVEALNDAIDRREEGIVVKHPESTYRPDKRKGSGWLKIKPEYVDNLMDELDL
LVVGGYFGKGFRAQLISHFLCAVAVPPSREGDHPKIFYSFCKVGSGYTLQELYEFNQKLA
KHWKKYDKENPPRWLQCTREKPELYVEPQNSFIVQIKATEINSSNVYKTGCTLRFPRLEK
VRDDKDWHQCMTTEELENMRQQAEGKLTGRYANVDDDEIVTSKRRKVTARVERPVAVPSR
FRAADTSNVKQTSEMLDGRELCIMNSPASHPKHELEKKVVECGGVVVQNPGIDTYCVLAD
KVNLKVKNIFSAKIYDVVKTTWLIECLDAGHLLPWLPSHMLYTSAKMAAQFALDYDSHGD
SYTEDVSEEKLKEIFATVGKKKSEKPMSAEEIAEIEMDYFPQDSHLGLFRLCRVYMDSCL
VIGEEDTHIKDCSLDLISLEMRFHGATMCPTLDRHVTHIIVDKSDLSRVREFRQRGQQRA
LKQHVVTSDWVTECIQKEKLISERPYEAAMS
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atggccagtactgaccagaaagatgatgcaagcacctcagcagcaggagttaccgcagtg
accactggaccaactgttgccagccagatcccttttggagagatctgtggattccttgag
aaagtccagaagaagaaggggagcgatgcgaaaaagaatctcttcaaggatttcttggga
aaatggagggctttccacaagcagctgcatgctaagaaccccaaaacaacagataatttt
tatccggctatgagactgctgctgccccaacttgagagagagagaatggcttatggaatc
aaagagcacaccctagctaaactctacatcgacatccttggtttagccaaggaaagcact
gatgcccggaagcttctgaactacagagctccaacagcaaaacaggaagctggagacttt
gccagtgtggctttctttgttctgcgtaacaggtgcccagagagaggaagtttaaccatc
aaggatgtgaatgataatcttgactcaatcgccctcaacaatgctaccaagaagaaagac
ttggtcaagcaaagtttgctgaccttactgagaaaaacaagtgcaatcgaacagaagtgg
ctcatacgcatgatcatgaaggaaatgaaagttggtcttagtcagcaatctattcttggt
acctttcatccggatgctgaagacttcttcaatgtgacaaacagtctcgcaaaggtttgc
agtgacttgtctgacccaagtgtgagactgaatgagatcgctatcagtgtgttcagtcct
ttcagccctatgctaggtgaaagggcaaaaataacacaggttgaacgtataatggaacac
aagagctttctgattgaaaccaaactagatggtgagagaatgcagcttcacaaagaagga
gataaatacatgtatttttcaagaagatctcatgattattctgggtcatttggaaagagt
ccaatggagggtagcttgacaccatacattgcaaactgttttaagagtaatgtccattcc
tgtatattggatggtgaaatgtgtgcatacaatgcagatacaaaagctttcatttcaaaa
ggcgaaaactttgatatcaaaagcttgcgtgatgatgaagatgttcaggtatgttatgct
gtctttgatgttctccttgtaaatgacaccaaacttgccaaccgccctctgaaggaaaga
ctcagctacctaccaaaagtattcactgtagtagaaggaagaatggtcctggtagaaagg
agagatgcggctacaaaggctgaggttgttgaggcattgaatgacgctatagatagacga
gaagaaggaattgttgtcaaacatccggaatcaacctatcggccggataagaggaaaggc
agtggatggttgaagatcaaacccgagtatgtggacaatctgatggatgagctagactta
ctggtagtaggaggctacttcggcaaagggtttcgggcccagctcatctctcacttcctg
tgtgcagtagccgttcctccaagcagagaaggagaccacccaaagattttttactcattt
tgcaaggttggatcaggttacaccttacaggagctctatgaattcaaccagaaacttgcc
aaacactggaagaaatatgacaaagaaaacccacctagatggttacagtgcacaagggaa
aaaccagaactttatgtggaaccacagaattctttcatcgttcagatcaaggctactgaa
atcaactcatcaaatgtgtataagacaggatgtaccctacgattccctcgtctggagaag
gttagagatgataaggattggcatcagtgtatgaccacagaggagctagagaacatgaga
cagcaagcagagggcaagttgacagggagatatgctaatgtagatgatgatgagatagta
acaagtaagagaagaaaagttacagcgagagtagaacgacctgttgctgtgccttctaga
ttcagagctgcagacacctccaatgtaaagcagacttctgaaatgcttgatggacgagag
ctctgcatcatgaacagccctgccagccaccctaagcatgagctagagaagaaagtggtt
gaatgtggaggtgtagtggttcaaaaccccggtatagatacatactgtgtgctagctgac
aaggtcaacctcaaggtcaaaaacatattcagtgccaagatctatgatgttgtaaagact
acatggctcattgaatgtttggatgctggtcatttgttgccatggttaccatcacatatg
ctgtatacgtctgcaaagatggcagcccagtttgccttggattatgacagtcatggagac
agctatacagaggatgtcagtgaagagaaactcaaggagatctttgcaactgtggggaag
aagaagagtgagaaaccgatgagtgctgaagagatagctgagatagagatggactacttt
cctcaagattctcatcttggtctgtttcgtctatgtcgtgtctacatggattcatgtctt
gtgatcggggaagaggatactcacatcaaagattgctctctagaccttatatccttggaa
atgagattccatggcgccaccatgtgtcctacactagacaggcatgtcacccacatcatc
gttgacaagagtgacttgagcagagtgagggagttccgtcaacgaggtcagcagcgagcc
ttgaagcaacatgtagtaacctcagactgggtcacggaatgcattcagaaagaaaagctg
attagtgaaagaccttatgaagcagcgatgtcttga
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