Lytechinus variegatus (green sea urchin): 121425665
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Entry
121425665 CDS
T11173
Name
(RefSeq) ATP-dependent RNA helicase A-like isoform X1
KO
K13184
ATP-dependent RNA/DNA helicase DHX9 [EC:
5.6.2.6
5.6.2.4
]
Organism
lvg Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lvg03041
]
121425665
03012 Translation factors [BR:
lvg03012
]
121425665
Enzymes [BR:
lvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
121425665
5.6.2.6 RNA 3'-5' helicase
121425665
Spliceosome [BR:
lvg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
121425665
Translation factors [BR:
lvg03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
121425665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
OB_NTP_bind
Helicase_C
DEAD
Dicer_dimer
HA2_N
nSTAND3
HA2_C
AAA_19
ATPase
AAA_22
Motif
Other DBs
NCBI-GeneID:
121425665
NCBI-ProteinID:
XP_041477748
LinkDB
All DBs
Position
12:complement(4874905..4918868)
Genome browser
AA seq
1346 aa
AA seq
DB search
MSELKSFLYSFLGKKKLTPDYDIRNSGPKHRQRFLCEVRVPTYSYVGIGNSTSKKDSQAN
AAKDFLNFLVRSGELNSKDVPLLDAPVASMSNEGPSSLPPGMSAPHQGLGMGGGPGDMGG
GGGGEHGGRDSHDGSMPSYQRSFFERQGDKRKLEEAEGADMNAGIHGNWTISNAKSRLHQ
YLQTNRIQADYKYTPVGQDHNRSFYAEMSIYLASKRRTIHAREQGSNKKTASVSCALSLT
RQLYHLKEIEAFTGERKAKKADSLEPYDVLLNKDVEERLTNVLFELNLSTVPPSHNPEEV
VSISGDTANQVFDNPEGPRGCSGVSWSPPMNNWNPWLNCNIDEGPIAHMSLEQISSELER
EHQGQQQNPEFRKIQDDRRSLPIFQSEREILNAIDHNSVVVIRGNTGCGKTTQVPQFILD
SYIRSGRGAECNIAITQPRRISAISIAERVAFERNEPLGVSAGYSVRFDTVRPRPLGAML
FMTVGTLLRKLEAGLRGISHVVVDEIHERDLNTDFLLVVLRDMLKANPGMRIVLMSATID
TTMFSHYFMDCPVIEVFGRAHPVQEYYLEDVVQMLGFVPRLDNRRKRRDEEDDDGEGEEN
MNKTISNEYSEQTRRALMQMSEKEMNFDLIENLLTYIGTLGVPGAILFFLPGWNWIFALM
RHLQEHPKFGGRDFCILPLHSQIPKEEQHRVFDTMPEGVTKIILSTNIAETSITINDVVY
VVDICKAKMKLFTSHNNMTNYAIVWASKTNLEQRRGRAGRVRPGFCFHLISRPRFEKLEQ
HTVPEIFRTPLHELALTIKLLRLGTIAEFLGKAIEPPPLDSVVEAVAALKEMHALDHQEE
LTPVGRILAKMPIEPRLGKMIILGCVLFVGDAMTIVASSMCFPEIFITFAGKVSNIHRNY
CRMRHSDHIATLAAFQEWEEQLQSGEDTAMNYCDHKGLQMMTLRMIYEARNQLKDILVME
GFPEECLAPQIFNFQAPDPKLDIVVSLLTMGLWPNVCFHKEKRKLLTTENKAALIHKSSV
NYSKFDQNFPSPFFVFGEKIRTRAVSAKGMTMVSPLHLLLFGARKVESCDGIIKLDDWVQ
LRMYHEAAAKVVALHPAIESLIFNMTSNPDSVTTPSPQDEMLINIIRALSKPNAGVFGSF
DSGDNMGPSGAKRGRFSFSSPAGGQGGFRGGRGGGGFGGGGRGGFGGGGRGGFGGGGGGF
RGGRGFGGGGGRGFGGGGGGGRRGWNREGGGGGGFRGGRGYGGGGSGGFGGGRGGGFGGG
GGYGGRDRGSDFGGDGGNDFGRGGDSGGSGSGFGSGGRGGFGRGGGGGFGGRGGGFGGGN
DGNGGGGSGSGDGGGYGAEGGWGSAS
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagctgaaatcatttctctacagctttctagggaagaagaagttaactcccgat
tatgacattcgcaactctggtccaaaacatcgccagagatttctctgtgaggttcgtgtt
ccgacgtattcttacgtcggcatcggcaactctaccagcaagaaagactctcaggcaaat
gccgcaaaggactttctcaatttcctggtccggagtggggagctgaatagtaaagatgtc
ccactcttggatgctcctgttgcatccatgtctaacgaaggaccttcatcattgccaccc
gggatgtcagcccctcatcagggtcttggaatgggtggaggccctggagacatgggagga
ggaggaggtggggaacatggagggagagatagtcacgatgggagtatgccttcatatcag
aggagtttcttcgagaggcaaggtgacaaacgaaaactcgaagaggctgagggagcagac
atgaatgcaggtatccatggcaactggacaattagcaacgctaagtcccgcctccatcag
taccttcagaccaatcgcatccaagctgattataagtatacacctgtaggtcaggatcac
aacaggtccttttatgctgaaatgtccatctatctcgcatcaaagcgacgcacaatccat
gcccgagagcaaggttccaataagaagacggcatcggtgtcctgtgctctctcattgact
cgacagctctaccatctaaaggagattgaagcattcaccggggaacgtaaagcaaagaaa
gctgactcgctggaaccttatgatgtgttgctgaacaaagacgttgaagagaggctgacc
aatgtcttgtttgagctgaatctcagcacagtcccaccctcacacaatcctgaagaggtc
gtgtcgatcagcggggatactgccaaccaagtttttgacaatccagaaggaccaagaggt
tgttctggagtctcctggtctcctcccatgaacaactggaacccatggctcaactgcaat
atcgatgaagggcccatcgctcatatgtccctggagcagattagttcagagcttgaacga
gaacatcaaggccagcaacagaatcctgaatttagaaagatccaagatgaccggcggtct
ctacccatcttccagtccgagagggagatcttgaatgccatagaccacaactctgtagtg
gtcatccgagggaatacaggatgcggtaagaccactcaggtgccacagttcatccttgac
agctacatccgctcaggaagaggagctgagtgcaatatagctatcactcagcctcgtcgt
attagcgccatctccatcgctgagcgtgttgcatttgaacgtaacgagcctctgggtgtc
agtgctggatactctgttcgtttcgacactgtgagaccccgcccccttggagccatgctc
ttcatgaccgtaggtacattattgaggaagctggaagcaggtctacgtggtatttctcat
gttgttgttgatgaaattcacgagagagatctcaatactgatttcctgttggtcgtactg
agagacatgttgaaagccaaccctgggatgaggatcgttctcatgtctgctaccatcgac
accaccatgttcagtcattacttcatggactgccccgtcatagaggtctttggaagagct
caccctgtacaagagtactacttagaggatgttgttcagatgctaggctttgtacccagg
cttgataacagaagaaagagaagggacgaggaggatgatgatggagaaggggaggagaat
atgaacaagactatcagcaacgagtattccgagcagaccaggcgagctctcatgcagatg
agcgagaaggagatgaactttgacctcattgagaaccttctaacctacattggtacgttg
ggtgtacctggagctattctcttcttcctgcctggctggaactggatctttgccctcatg
agacatctccaagaacatcctaaatttggtgggcgtgatttctgcattcttccactccac
tctcagattccaaaggaagaacagcatcgagtctttgataccatgccagaaggagtcacc
aagatcatcctatcaaccaacattgccgagaccagtatcaccatcaatgatgttgtctat
gtggtggatatttgcaaagccaagatgaagctgttcacatcccataacaacatgactaac
tatgccattgtatgggcatccaagaccaaccttgaacagcgaagaggtcgagctggaaga
gttcggccaggcttctgcttccatctcatcagtcgcccaaggtttgaaaagttggagcag
cacaccgttccagagatcttcaggacacccctccatgaactggccctcaccattaaactc
ctcagactgggtaccattgcagagttcttgggcaaagccattgaaccacccccgcttgac
tcggtggtagaggctgtagcagctttgaaggagatgcatgcattagaccaccaggaagag
ctcactccagtaggccgtatcttggctaagatgcccatcgaaccacgtcttggaaaaatg
atcatccttggctgtgttctctttgttggtgatgcgatgacgatcgtagccagtagcatg
tgcttcccggagatcttcatcacgttcgcaggcaaggttagtaacatccatcgtaactac
tgccgtatgagacacagtgatcacatagcaacgcttgctgcattccaggagtgggaggaa
cagttgcaatctggagaggatactgctatgaactactgtgatcataaaggattgcagatg
atgactctgaggatgatctatgaagcaaggaatcagcttaaagacatcctggttatggaa
ggattcccagaagaatgcctcgcccctcagatcttcaatttccaagcccctgacccaaag
ctggacattgtcgtgtctttgctgaccatgggactctggccaaacgtctgctttcacaag
gagaagaggaagctactgaccacagagaacaaggctgctctcatccacaagtcatcggtc
aactactccaagtttgaccagaacttcccttctccgttctttgtcttcggtgaaaagatc
cgaacccgagctgtatcagctaagggtatgaccatggtatctcctctccatctccttctg
tttggagcacgtaaggtggaatcttgtgatggtatcatcaagctggatgactgggtccaa
ctgaggatgtaccatgaagcagcagctaaggttgtagcccttcatcctgccatagagtct
cttatcttcaacatgacatccaacccagactcggtgaccacaccatctcctcaggatgag
atgctaatcaacatcatcagagcgctctcaaaacccaacgcgggtgtcttcgggagcttc
gactctggggataacatgggacctagtggtgccaagagaggacgattttccttttcctcg
cctgctggcggacaaggaggtttcagaggtggccgtggaggcggtggcttcggtggtggt
ggtcgaggtggctttggcggtggtggtcgcggaggtttcggaggcggtggcggcggcttc
agaggaggtagagggtttggaggaggaggaggacgaggttttggaggtggtggtggcggg
ggtagacgaggttggaaccgagagggaggaggaggcggaggcttccggggaggtcgcgga
tatggaggaggaggcagcggtggctttggaggtggaagaggaggtggattcggcggcggt
ggtggctatggaggcagagacagaggtagtgacttcggtggtgatggtgggaatgatttt
ggccgaggaggtgactctggaggcagtggaagcgggttcggaagtggcggccgaggaggc
tttggtcgcggtggtggaggaggatttggtggaaggggaggtgggttcggagggggtaat
gatggaaatggtggaggaggatcaggctctggtgatggcggaggttatggggccgaagga
ggctggggtagtgcctcctaa
DBGET
integrated database retrieval system
