Lytechinus variegatus (green sea urchin): 121426705
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Entry
121426705 CDS
T11173
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1-like
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
lvg Lytechinus variegatus (green sea urchin)
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lvg03036
]
121426705
03400 DNA repair and recombination proteins [BR:
lvg03400
]
121426705
Chromosome and associated proteins [BR:
lvg03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
121426705
DNA repair and recombination proteins [BR:
lvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
121426705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_2nd
Ig_SMCHD1_4th
Ig_SMCHD1_6th
Ig_SMCHD1_5th
Ig_SMCHD1_7th
HATPase_c_3
SMC_hinge
HATPase_c
PH_FT_C
Motif
Other DBs
NCBI-GeneID:
121426705
NCBI-ProteinID:
XP_041479014
LinkDB
All DBs
Position
1:87386698..87445253
Genome browser
AA seq
2007 aa
AA seq
DB search
MAATMASESSMEEDSTVYVFDRRKGSEPERKITLGGVFSFADFKDLIKKEFGIPDNGKFV
IATTNREEINTDEAYEELVEDGDTLYLLVHLKQALLAPTQERVEYQPHFDTLIRSGMYEY
YASEGQNPLPFAIAELIDNSLAATMNNDGPRCIEIRLYLDETGDKSMVCVIDNGKGMTTR
ELNNWAIYRLSKFNRKRRRHRHQENNGDEDREIPKSLNSDISYFGVGGKQAVFFIGDSTR
MISKPKDSKDVHEMTVSKDEFERREKCKEDIYKGIIHNRQPGEGSHVPPEDEILHSLIKE
EEGKENFTHVVITSVKSQHIKFLKEDFTRWSRQLAHIYHYYIHGPSGNQSHLSNSMFRTP
SPYKNIDISITMYKKGHTPRQLNLRDIEDDHQSNFIRSSKDTFEFRVLVEGTGLVEGVLR
YHPFLFDRESYPVDYGLAVQEVDDESDFNRDRPARGSKAIFECYWNGRLIPYTLVQDFDW
CSVPKRRLSIPVECYNRVSGALFANNKFEVSTNKLTFIDLELKLKDKSAVFQRVVGGQPQ
RVKIDKQFTEWLHECHENLDKQVCFKDYVGNIIRHELPKKQQGPWAVFETVEWDGKTYST
GQQVRVLRTSPILHGSIQRFMLFGDFENEIQNGTLFATGGEFEIVQEPRLLYNETKIYPL
SKLDRTADERQIKKHIDDEEGKLPGVLVIFWPEANEVHAGEKRPAGKLIGAIKAEIHNRK
GQSMSRLPGAQHNSKKLMVEMKIIWHSNSGDKVIVTHMSQHHKTWAFWFRQMDIVRNLGP
HTLILQAVLGEEGATDFGGHPLPSHKIKFTSTEGPPSKFSIDILDPPFRVDVPFNIPLQL
QDEFNYPTKPTNNLKPILEASGLAMSYEKTEIKGMSLIVKGVKASGDVGSAQGKNFNLTL
KIPGLEIPTQQLKIRILPGEPHKIIVPTFEETDKLCIENGKVLPISVEIRDGAGNFSMHP
KLLVQCKFLGAVGLPTYTADCSNSGKATLTGNPIFIKNISKKSQKINARIELPHMKGVSS
VEKAIVVTPSTSACKINVFFCQHQHINDQKKKPVKMKPQEEIEWTAGESTSHISFALFDE
GDHHMRITKELANKFKFNWLPSFDPSILMEGYLPPIKVPNTVGDKTFCQLRLTDGSGLEF
SFYVKPLPGEATQIKCQSKGSKKVKLGETLDGEIVIHVTDAYGNSMKKLPHGSLSNLSVT
ADDLDTKILQKALLPNVGFVLRNVKFDGSAVGVREVMVKYNDFSDHIRLEVLPGKPAKLL
VIGWMPEETLIAYDGAQINNPLGFQVCDEAGNHISNVNSTISLQYDKALKVSSTSSLTAR
PFADGQVSFGKLTLSGPCGKYTLHAKMNLGRSPLTSSGLTVQLKPDPKKAHRLQVDYRKE
RVYIAGNRFPDFDISVIAADESTMTNIAHKKISMRMWKSATKDPHTGPPPSRALITEIDK
PSNEDREGHFYCRRRKLPVEASMHWIIFQASLDQAIFYSEPIGFDIQPGPPIKLIPEIAP
PTPTVSNTPRSHSRTLIKALRLQLVDDFGNLTGKDLAGNIEVHMKGSNGAELPKLQGNNS
MMQFPLNKGISFIQNISIQENTPGHDGSEYKLHFSLKSNGPEVKPFIQPFLFYNDAKKQQ
RMSQLSKERDTLKASIKTYKELFDGKKQLLQMFKESAEDAARHEVQLRGEMKHYGVRVAQ
IATRKGAEEYMTSTQEKMVQLRSKPRRQCGMQRYETRDGEILGKVAHLAEVEEENDAYVL
SWHMASDLDCVLTTTVAKAKEVFANTRGRQQVLPIESIYKKGLTEWDKPLPHKRVPMKHG
HTPPGNPVYARHLLRFTGHEANCKIAFSLLLQDTILLDTLDDATAYRQSIVKYIHCPTLL
TRDGNRIRGNGKFGGLQNRCPSDLRGCVFGEPPPKELESLEKQMVILEKIIHAIKSREQA
QVEYKVQEAALRSADMVAKQRDCQEAEEQLALVNQKIKMAESSTTDRSPIPLSTTSSNSR
GQATARGTTRRPAPSVPESPRTKRRKP
NT seq
6024 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaccatggcaagtgaaagttcgatggaagaagattcgactgtgtacgtgttc
gaccgtcgcaagggctcagaaccagaacgaaaaatcacccttggaggagtcttcagcttt
gctgattttaaagacttaataaagaaagaatttggtatcccagataatggcaagtttgtc
attgctaccaccaacagagaagagatcaatacagatgaagcttatgaagagctggtggag
gatggagacactctgtatcttcttgtgcatcttaaacaggccttgcttgccccaactcaa
gagagggtggagtaccagcctcactttgacacccttattaggagtggaatgtatgagtac
tatgccagtgaaggacagaatccattaccttttgcaatagctgaactgatagacaactct
cttgcagccacgatgaataatgatggacccaggtgcatagaaatcagattgtacctggat
gaaacgggggataagagcatggtctgtgtcattgacaatggtaagggcatgacaaccaga
gaactcaacaactgggccatctatcgtctctcaaaattcaaccgaaagaggagaagacat
agacatcaagagaataacggtgacgaagacagagagattccaaaatctctaaacagtgac
atctcatactttggagttggaggaaagcaagcagtgtttttcattggtgattcaactagg
atgatcagcaaacctaaggattcaaaggatgttcatgagatgaccgtatcaaaagacgag
tttgagaggagagagaaatgcaaagaagacatctacaagggcatcatccataacagacag
cctggtgagggtagtcatgtgcctcctgaggatgagatcttacacagtctgatcaaggaa
gaggaaggcaaggagaacttcacccatgtcgttatcactagtgtcaaatcacagcacatc
aagttcctcaaggaagacttcactaggtggagcaggcagctagcacacatctatcactac
tacatccacggaccatcaggcaatcagtcccacctgtccaactccatgtttcgtacaccg
agcccttacaagaacattgacattagcatcaccatgtacaagaagggccatacaccacgc
cagctcaatctcagagacattgaagatgatcatcagtctaacttcatcaggtcatccaag
gacacatttgaattccgtgtattggttgaaggaactggtctggtagagggcgtgcttcgt
tatcatccatttctctttgacagagagtcctatcctgtggactatggtttagctgttcag
gaagttgacgacgagagtgatttcaacagagatcgacctgcgaggggtagcaaagccatc
tttgagtgctactggaatggaagactcattccatatacacttgtccaagactttgactgg
tgcagcgtgccaaagaggcgactcagcattcctgtcgagtgctacaacagggtgtctggc
gccctctttgccaacaacaaatttgaggtcagcacaaacaagctgaccttcattgacctt
gagctgaagctaaaagataagagtgctgtctttcagagagtggtagggggtcagccccag
agagtcaagatcgacaaacagttcacagagtggctgcatgagtgtcatgagaatcttgac
aaacaggtctgtttcaaagactatgtgggtaacatcattaggcatgaactacccaagaaa
cagcaaggaccttgggctgtctttgagactgtggagtgggacggaaagacatattccaca
ggacaacaggtacgagtcttgaggacaagtccaattctgcatggatcgatacagcgcttc
atgttgtttggggactttgagaacgagatccagaatgggacattgtttgcaacaggagga
gaatttgaaattgtacaggaaccaaggctattgtacaatgaaaccaagatttacccccta
agtaaactggacaggacagcggatgagaggcagattaagaaacacattgatgatgaagaa
ggaaaacttccaggagttcttgtcatcttctggcctgaagcgaatgaggtccatgcagga
gaaaaacgaccagctgggaaactaataggtgcaatcaaagctgagatccataataggaaa
ggtcaatccatgtcgaggcttcctggagctcagcataactctaagaaactcatggtggaa
atgaagatcatctggcattccaacagtggtgacaaggtgatagtaacccacatgagtcaa
catcacaagacatgggcattctggttcaggcagatggacattgtaaggaaccttggcccc
cataccctgatactgcaggcagtccttggggaggaaggagccactgactttggagggcac
ccactaccaagtcacaagatcaagttcacaagtacagagggtccaccaagcaagttcagc
attgatatcctggatccaccgttcagggtagatgtccctttcaacattcctcttcagcta
caagatgagttcaactatccaaccaagccaacgaacaacctcaaaccaatccttgaagca
agtggccttgctatgagctatgagaaaactgaaatcaagggtatgtctttgatagtgaaa
ggagtgaaggcatcgggggatgtaggatcagcccaaggaaagaacttcaatctaaccttg
aagataccaggactggagatcccaacacaacaactaaagatcagaatcttgccgggtgag
ccacacaagatcattgtgccaacatttgaagaaacagataagctttgcatagagaatggc
aaagtgcttcctatatcagtagaaatcagagacggagctggtaacttctcgatgcatcca
aaactcttagtacagtgcaagtttcttggtgctgttggattgcctacatacacagcagac
tgcagtaactcagggaaggcaacccttaccggcaatcccatcttcatcaaaaacatctcc
aagaaatcacagaagatcaacgctagaattgaattaccgcatatgaaaggagtcagcagt
gtggagaaggctatcgtggtcacaccaagcaccagtgcgtgtaagatcaacgtgttcttc
tgtcaacatcaacacataaacgaccaaaaaaagaaacctgtcaagatgaaaccacaggaa
gaaattgagtggacggccggagagagtacatcacatattagttttgctctgtttgatgag
ggtgaccaccacatgaggatcaccaaggagttagccaacaagtttaaattcaactggcta
ccttctttcgacccctcaatcctcatggaagggtacctacccccgatcaaggttcctaat
acggtaggagataagacgttctgtcagctgagactcaccgatggatcaggcctagagttc
tccttctatgtcaaaccactccctggtgaggcaacgcagattaaatgtcagagcaaggga
agcaagaaagtgaagctaggagagaccttggatggtgagatcgtcatccatgtcaccgat
gcatatgggaatagcatgaagaagctaccacatggatccttgagcaacctgagtgtgacg
gcagacgatctggacaccaagatcctgcagaaggcacttcttcccaatgtgggatttgtc
cttcggaatgtcaagtttgatgggtcagcggtaggggttagggaagtcatggtgaagtac
aacgacttttctgaccatattaggttagaagtgcttccagggaaacctgccaagctactt
gtgatcggctggatgccagaggagacactgatagcatatgatggtgctcagatcaacaat
ccattgggctttcaagtttgtgatgaagctggtaatcatatctctaatgtcaattcaact
atctctctgcaatatgacaaggcattgaaggtatcgtctacttcatcattgacagcaagg
ccatttgctgatggtcaggttagctttggcaagcttaccttatctggtccctgtgggaag
tatacgcttcatgcgaagatgaaccttggaaggtctcccctcacgagttctggtctcacg
gttcaactcaagccagatccaaagaaggctcacaggcttcaggtagactacaggaaggaa
agagtctacattgctgggaatcgtttcccagattttgatatctctgtaattgctgctgat
gagagtacaatgaccaacattgctcacaagaagatatcaatgaggatgtggaagtcagct
acaaaggatccacacactggtccgccaccatcgagggcgctaataacagaaattgacaaa
cccagcaatgaagacagggaaggtcatttttactgtaggaggagaaaacttccagtagag
gccagcatgcactggataatattccaagcttcattggatcaagctattttctactcagaa
ccaattgggtttgacatccagcctggtcctcctatcaaactgatcccagagatagcccca
cctacacccactgtctctaatacaccacgctcacacagtagaactctcatcaaagctctt
agactacagctcgtggatgattttggaaatttgaccggcaaagacttggcgggtaacatt
gaagtccacatgaagggcagcaatggagcagagctgcccaaactccaaggcaataatagt
atgatgcagtttccattgaataaaggcattagcttcatacagaacatctctatccaagag
aatacaccaggccatgatgggagtgagtataaattacacttctcactgaagagcaatgga
cctgaagtcaagccgttcattcaaccattcctcttctataacgatgctaagaaacagcag
aggatgtcacagctgtcgaaggagagagacacactcaaggcttctatcaagacatacaag
gaattgtttgatgggaaaaaacagcttctgcagatgttcaaagaatctgctgaggatgct
gcaaggcacgaggtccagttacgtggagaaatgaagcattatggggtcagagtcgcccag
atagcaacgaggaaaggagcagaagaatatatgacatctactcaagaaaagatggttcag
ttgaggagtaaaccaaggaggcagtgtgggatgcaacggtatgagacacgcgatggcgaa
atactcggaaaggtagcacacttggctgaagtagaggaagagaatgatgcctatgtctta
tcatggcacatggcatcggatttagactgtgtcctcaccaccacagttgctaaagctaaa
gaggtgtttgcaaacaccagagggcgccagcaggttcttcccatcgagtccatctacaaa
aagggcctcacagagtgggataagcctcttcctcacaagagagttcctatgaagcatggt
catactccaccaggcaacccggtctatgcaagacatctactaaggttcacaggacatgaa
gcaaactgtaaaatagccttcagtctcttgctacaggataccatactcttagatacccta
gatgatgcgacagcatacaggcaatcgatcgttaagtacatccactgcccaacgctgctc
acccgtgatggtaatcgtatccgtggtaacggaaagttcggaggacttcagaaccgatgt
ccatcagacctaaggggatgcgtctttggagaacctcctcccaaggagctggaatctctc
gagaagcagatggtaatcctggaaaagatcatacatgccataaagagccgtgagcaagct
caggttgaatacaaggtgcaggaggcggccctaagatcagcggatatggttgccaagcaa
cgggattgccaggaagccgaagaacagcttgctcttgtcaatcaaaaaatcaaaatggct
gaaagttctactacagatcgttccccaattcctttgtctaccacatcttccaactcaaga
gggcaggctacagcaagagggacaacgagaagaccggcgccctctgtaccggaaagtcct
cgaaccaaacggagaaaaccctaa
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integrated database retrieval system
