Leucobacter viscericola: G7068_02645
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Entry
G7068_02645 CDS
T07181
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lvi
Leucobacter viscericola
Pathway
lvi03030
DNA replication
lvi03410
Base excision repair
lvi03420
Nucleotide excision repair
lvi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G7068_02645 (ligA)
03410 Base excision repair
G7068_02645 (ligA)
03420 Nucleotide excision repair
G7068_02645 (ligA)
03430 Mismatch repair
G7068_02645 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lvi03032
]
G7068_02645 (ligA)
03400 DNA repair and recombination proteins [BR:
lvi03400
]
G7068_02645 (ligA)
Enzymes [BR:
lvi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G7068_02645 (ligA)
DNA replication proteins [BR:
lvi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G7068_02645 (ligA)
DNA repair and recombination proteins [BR:
lvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G7068_02645 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G7068_02645 (ligA)
MMR (mismatch excision repair)
DNA ligase
G7068_02645 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G7068_02645 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QIK64669
UniProt:
A0A6G7XJR3
LinkDB
All DBs
Position
complement(549887..552223)
Genome browser
AA seq
778 aa
AA seq
DB search
MSENIGDLAFEDARAEVESLTAEIERLRTAYYSEATSLVSDAEYDVLFHRLEALERAFPE
LAGQDSPTQEVGAAVVSAGFPEHEHAERMLSLDNVFSIDEFREWAEKTRAVAGREVRWLT
ELKIDGLAISLAYRNGKLETATTRGDGRVGENITENVRFIPVIPRELHGDDIPEFFEARG
EVFLCRDDFEALNVRQHELQASFVAEQLAKGRDEDAIPVRYPEFANARNTAAGSLRQRAD
KKTEAELELMRDRLGRLSLYVHGIGAWAGVADSQSDAYRLLASWGLPVSPYSRVLDTVDE
VVSFIAERGENRHDVEHEIDGIVVKVDELELHAELGETSRAPRWAIAYKYPPEEVHTKLI
DIRIGVGRTGRATPYAVMEPVKVAGSTVRQATLHNQEVVKAKGVLIGDTVVLRKAGDVIP
EVLGAVLERRDGSEVEWQMPADCPECGTPLRAMKEGDIDLRCPNARACPAQVRGRVEHIG
SRGALDVEVLGEITAAALTQPEVPSTPPLETEAGLFELTLEQLVPIEVIVRDSETGERRI
DEATGEYVRRAPFQRVSMEYPPEAEGLTPAERRAVGYKKDHRAVTPSKDAETFLAELEKA
KTKPLWRLLVSLNIRHVGPVAARALAEWFGSLDAIRAASVDELSVVEGVGGIIAESLKEW
FEVDWHLEIVERWTAAGVQWATPGHPGPGAAIAEDGVLAGLTIVATGTLDGFTRDGAKEA
IIQAGGKAASSVSKKTDYVAAGPGAGSKLTKAEELGIPVLDAEQFAVLVTEGPDALGL
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggagaatatcggggatctcgcgtttgaagacgcccgggcagaggtagagagcctc
accgccgagatcgagcgtttgcgaaccgcctattattctgaggccacaagcctggtctct
gatgcggagtacgatgttctcttccacaggctcgaggccctagaacgcgcattccccgag
cttgccgggcaagacagccccacgcaagaggtcggtgcggcggtggtgtcggcggggttt
cccgagcacgagcacgcggagcgcatgctgagtcttgacaacgtgttctccatcgacgag
tttcgggagtgggctgagaagacccgtgccgttgcgggtcgtgaggtgcgctggctcacc
gaactcaaaattgacggcctggcgataagtctcgcctacagaaacggcaaacttgagacc
gcaaccacccgcggtgacgggcgagtcggagaaaacatcaccgaaaatgtgcgttttatc
ccggtgattccgcgtgaactgcacggcgacgatatccccgagttcttcgaggcgcggggt
gaagtgttcctgtgccgcgacgattttgaagcgcttaacgtgcgacagcacgagttgcaa
gcgtcctttgttgctgaacagctggcgaagggccgagacgaagacgccattccggtgcgc
taccccgaatttgcgaacgctcgtaacacggcggccggtagcctgcggcagcgcgcagat
aagaaaactgaagccgaactggaactgatgcgagatcgcctggggcggctctcgctgtat
gtgcacgggatcggggcctgggccggtgtagctgacagccagtcagacgcctaccgcttg
cttgcctcgtgggggcttcctgtctctccctattcccgagtgctcgatacggtggatgag
gtcgtcagcttcatcgcggagcgcggtgagaaccggcacgatgtcgaacacgagatcgat
ggcatcgtcgtcaaggttgatgagctggaactgcacgctgagctgggggagaccagccgc
gcgccgcgctgggcaatcgcctacaagtatccgccggaggaagtccacacgaagctcatt
gacatcaggatcggcgtggggcgcaccgggcgtgcaaccccctacgcggtgatggagccc
gtgaaagtcgcggggtccacggtgcgccaagctacgctgcacaaccaagaagtggtgaag
gcgaagggtgtgctgatcggcgacactgttgtgctgcgtaaggctggcgatgtgatccca
gaggtgctcggggccgttcttgagcgccgcgacgggtctgaagttgagtggcagatgcca
gctgattgccccgagtgcggcacccctctgcgcgcgatgaaagagggcgacatcgacctg
cgctgcccgaatgcgcgcgcctgcccagcgcaggtgcgcgggcgagtggagcacatcgga
tcacgcggggcgctcgatgttgaggtgctcggtgagatcaccgccgctgcgctcacgcag
cctgaggtgccctcaacacccccgctcgaaactgaagccgggctgtttgagctgacgctg
gagcagttggtgccgatcgaggtgatcgtgcgtgacagcgagaccggtgagcgccgtatc
gatgaggcgacgggtgagtacgtgcggcgggcaccgttccagagggtgtcgatggagtac
ccaccggaagccgaagggctcacaccggctgagcgacgagccgttgggtacaagaaggat
caccgcgctgtcacgccttcgaaggacgcggaaacgttcctcgcggagctggaaaaagcc
aagactaagccgctgtggcgactgctcgtgtcgctgaacattcgacacgtcggtcccgtt
gccgcccgtgcactcgcggagtggttcggatcactcgacgcgattcgggccgcctccgtt
gacgagctgtctgtcgttgagggcgtcgggggcattattgctgagtcgctcaaagaatgg
tttgaggtcgactggcacctggagattgtggagcgctggaccgcggccggagtgcagtgg
gcgacacccgggcatcctgggccgggggctgccatcgccgaggacggggtgctcgccggg
ctgacgatcgtcgcgaccggcacacttgacggctttacgcgtgatggcgcgaaggaagcg
atcattcaggccggtggcaaggcggcctcgagtgtctcgaaaaagactgactatgttgcc
gcgggccccggtgctggctcgaagctcacgaaggctgaggagctcggaattcccgtgctg
gacgcggagcagtttgctgttctcgtgacggagggaccggacgcgctcggactgtga
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