Lacinutrix venerupis: BWR22_10130
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Entry
BWR22_10130 CDS
T04680
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lvn
Lacinutrix venerupis
Pathway
lvn03030
DNA replication
lvn03410
Base excision repair
lvn03420
Nucleotide excision repair
lvn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lvn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BWR22_10130
03410 Base excision repair
BWR22_10130
03420 Nucleotide excision repair
BWR22_10130
03430 Mismatch repair
BWR22_10130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lvn03032
]
BWR22_10130
03400 DNA repair and recombination proteins [BR:
lvn03400
]
BWR22_10130
Enzymes [BR:
lvn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BWR22_10130
DNA replication proteins [BR:
lvn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BWR22_10130
DNA repair and recombination proteins [BR:
lvn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BWR22_10130
NER (nucleotide excision repair)
GGR (global genome repair) factors
BWR22_10130
MMR (mismatch excision repair)
DNA ligase
BWR22_10130
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BWR22_10130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
Auto_anti-p27
5_3_exonuc
HHH_3
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
APY00654
UniProt:
A0AAC9PXJ6
LinkDB
All DBs
Position
complement(2236271..2238262)
Genome browser
AA seq
663 aa
AA seq
DB search
MTIQEKINQLRNTLREHNYNYYVLDNPTISDYDFDIKLKELQALEEANPEFYDANSPTLR
VGGEVTKNFNTVTHEHRMYSLDNSYSLEDLKDWETRIKKLVDGDVAYTCELKYDGASISL
TYENGSLVRAVTRGDGFQGDDVTTNIKTIKSVPLKLKGSYPLKFDIRGEIVLPFDGFVKM
NEERVANGEEPYKNPRNTASGSLKLQDSAEVAKRPLECLLYNLTGTNLGVENQFESLVKA
RQMGFKVPNEARLCNSIEEVFQFINHWDKERHNLPYETDGVVVKVNNLYQQEELGYTAKA
PRWAMAYKFKAEQVSTILKEITYQVGRTGAITPVANLEPVELAGTIVKRASLHNADQIEK
LDIRVNDEVFVEKGGEIIPKIIAVDLSKRPLNSEPTQYITHCPECQTPLERVEGEAKHFC
PNYNGCEPQVVGRIQHFISRKAMDIDGLGGETVALLVKEGLITNYADLYALNKEQVMPLE
RMAEKSAENLINGIDASKQIPFERVLFAIGIRFVGETVAKKLAKHYKSIEALANASIEDL
EKVDEIGVKIAESVVAFFASEENVNTIRRLKEFGVQLEVSAEKLANLTNKLEGKSFVVSG
VFTQVSRTELKKLIEDNGGKNVSSISSKTDFVVAGDKMGPSKRDKAEKLNIPLITETDFL
NML
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgacaatacaagaaaaaataaaccaacttcgtaacacacttcgcgaacataattataat
tattatgtgctagataatcctacgattagtgattatgatttcgatataaaattaaaagaa
cttcaagctttagaagaagcaaatccagaattttatgatgctaattccccaactttacga
gttggaggagaggttacaaaaaattttaataccgtaactcatgagcatagaatgtattct
ttggataattcatattctttagaagatttaaaagattgggaaactagaattaaaaagtta
gtagatggagatgttgcttacacatgcgaacttaaatacgacggagcttcaataagttta
acatacgaaaatggaagtttagtaagagcagtaacaagaggagatggttttcagggagac
gatgtaactacaaatattaaaactattaaatctgtacctttaaaattaaaaggtagttat
cctttaaaattcgacattcgtggagaaatagttttgccttttgatggctttgttaaaatg
aatgaagagcgtgtagcaaatggagaggaaccgtataaaaatcctagaaatactgcttca
ggaagcttaaagttgcaagatagtgcagaggttgctaagcgacctttagaatgtttgttg
tataacttaacaggaactaatttaggtgttgaaaatcaatttgaaagtttggtaaaagca
aggcaaatgggctttaaagttccaaacgaagcgcgcttatgtaattctattgaagaggtt
tttcaatttataaatcattgggataaagaaaggcataatcttccttacgaaacagatgga
gtagtagttaaagttaataatttatatcaacaagaagaattaggttatacagctaaagcg
cctcgttgggcaatggcatacaagtttaaagcagagcaagtatctactattttaaaagag
ataacatatcaagtgggtagaacaggagcaattactccagttgctaatttagaacctgtt
gaattagcaggaaccattgtaaaaagagcatctttacataatgcagaccaaattgaaaag
ttagatatacgtgtaaacgatgaagtttttgtagaaaaaggaggagagataattcctaaa
attatagctgtagacttgtctaaaagacctttaaattctgagccaacacaatatataaca
cattgtccagagtgccagacaccgttagaaagagtggaaggtgaggcaaaacatttttgt
ccaaattataatggttgcgaaccacaggttgtgggaagaatacaacattttatttctaga
aaagctatggatatagatggtttaggaggagagactgttgcacttttggtaaaagaaggt
ttaattactaattatgcagatttatatgcacttaataaagagcaagtaatgcctttagaa
agaatggctgaaaaaagtgcagaaaacttaattaatggtattgatgcttcaaagcaaata
ccttttgagcgtgttctatttgctattggaattcgttttgttggagaaacggttgcaaaa
aaattagctaaacattataaaagtattgaagctttagcgaatgcttctattgaagattta
gagaaagtagatgaaataggtgttaaaattgcagaaagtgttgttgctttttttgcttca
gaggaaaatgtaaatactatacgaagacttaaagagtttggtgttcagttagaggtttct
gcagaaaaattggctaatttaacaaataaattagaaggtaaatcttttgttgtttcgggt
gtctttactcaagtttctagaacagagcttaaaaagcttatagaagataatggcggtaaa
aatgtaagttctatatcttctaaaacagattttgtagttgctggcgataaaatgggacca
agtaaaagagataaggcagagaaattaaatattccgttaataactgaaacagatttttta
aatatgctttaa
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