Limimaricola variabilis: T8T21_04565
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Entry
T8T21_04565 CDS
T09625
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lvr
Limimaricola variabilis
Pathway
lvr03030
DNA replication
lvr03410
Base excision repair
lvr03420
Nucleotide excision repair
lvr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lvr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
T8T21_04565 (ligA)
03410 Base excision repair
T8T21_04565 (ligA)
03420 Nucleotide excision repair
T8T21_04565 (ligA)
03430 Mismatch repair
T8T21_04565 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lvr03032
]
T8T21_04565 (ligA)
03400 DNA repair and recombination proteins [BR:
lvr03400
]
T8T21_04565 (ligA)
Enzymes [BR:
lvr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
T8T21_04565 (ligA)
DNA replication proteins [BR:
lvr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
T8T21_04565 (ligA)
DNA repair and recombination proteins [BR:
lvr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
T8T21_04565 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
T8T21_04565 (ligA)
MMR (mismatch excision repair)
DNA ligase
T8T21_04565 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
T8T21_04565 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WPY96028
LinkDB
All DBs
Position
complement(931087..933270)
Genome browser
AA seq
727 aa
AA seq
DB search
MTAEQDLRATDVAALTEAQAAEELERLAAEIGAANTAYHAEDAPRISDADYDALRRRNAE
IEARFPSLKRADSPSDQVGAAPADGFGKVPHAVRMLSLSNAFTDEEVVDFAARIRRFLGL
AEDAPLDFTAEPKIDGLSLSLRYEMGRLVRAATRGDGAVGEDVTANARTIDDIPETLDGA
PDVLEVRGEVYMSHADFAALNARHAERGSKTFANPRNAAAGSLRQLDPEITRSRPLRFFA
YAWGELSAPLATHQYDAIARLQALGFCTNPLTRRCDTIEKMLDAYREIEARRADLGYDID
GVVYKVDDLSFQRRLGMRSTTPRWAMAHKFPAELAWTTLEKIEIQVGRTGALSPVARLKP
VTVGGVVVSNATLHNEDYIRGRDSRGMEIREGREIREGDRVQVYRAGDVIPKIADVDLAR
RPKDSVPYVFPDHCPECGSAAPREEGDAIRRCTGGLICPAQAVEKLRHLVSRAAFDIDGL
GAKQVEQFHRDGWIREPADIFTLRERFGTGMQQLKNREGWGEKSANALFDAIDAARRVPL
ARMLFGLGIPHVGEVAAQVLARHFGTWDALIAAIDAAASEPAAQAEDDKARKAALPESPH
WAEITGIDGIGFTVAVSLVTAMSQEGERGSVDRLVAHLDIQPAEKPRAEGSPVAGKIVVF
TGTLERMTRAEAKARAEQLGAKVAGSVSGKTDLLIAGPGAGSKAAKAEALGVEVLDEDGW
LALIGDA
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
ttgacggcggaacaggatctgcgcgcgacggatgtcgcggcactcaccgaggcgcaggcg
gcggaggagctggaacggctcgcggccgagatcggggcggcgaacaccgcctatcacgcc
gaggatgcgccgcggatcagcgacgcggattacgacgcgctgcgccgccgcaacgccgag
atcgaggcccggtttccgtcgctcaagcgggcggacagcccctccgatcaggtcggcgcc
gccccggccgacgggttcggcaaggtgccgcacgcggtgcggatgctgtcgctctccaac
gccttcaccgacgaagaggtggtcgatttcgcggcccggatccgcaggttcctgggtctg
gccgaggacgcgccgctcgatttcaccgccgagcccaagatcgacgggctgtcgctgtct
ctgcgctacgagatgggccggctggtccgcgccgcgacccgcggcgacggtgccgtgggc
gaggacgtgaccgccaatgcccgcaccatcgacgacattcccgagacgctcgacggcgcg
cccgacgtgctggaggtgcgcggcgaggtctatatgagccatgccgacttcgcggcgctc
aacgcccgccatgccgagcgcggctccaagaccttcgccaacccgcgcaacgccgccgcc
gggtcgctgcgccagctcgaccccgagatcacccggtcccggccgctacgtttcttcgcc
tatgcctggggcgagctgtcggcgccgctggcgacgcatcaatacgacgccatcgcccgg
ctgcaggcgttgggcttctgcactaacccgctgacccggcgttgcgacaccatcgagaag
atgctcgacgcctatcgcgagatcgaggcgaggcgtgccgatctgggctatgacatcgac
ggcgtggtctacaaggtcgacgacctgtcgttccagcgccggctcggcatgcgctcgacc
acgccgcgctgggcgatggcccacaagtttccggccgaactggcctggaccacgttggag
aagatcgagatccaggtggggcgcaccggcgcgctgtcgcccgtggcgcggctgaagccg
gtgaccgtcggcggcgtggtcgtctccaacgccacgctgcacaacgaggactacatccgg
ggacgcgattcccggggcatggagatccgcgagggccgcgaaatccgcgagggcgaccgg
gtacaggtctaccgcgccggcgacgtgatccccaagatcgccgatgtcgatctggcgcgc
cgtcccaaggacagcgtgccctatgtctttcccgatcactgccccgaatgcggctccgcc
gccccgcgcgaggagggcgacgcgatccgccgctgcacgggtggactgatctgcccggcc
caggcggtcgagaagctgcgccatctggtgagccgcgccgccttcgacatcgacgggctg
ggcgccaagcaggtcgagcagttccaccgggacggctggatccgcgagccggccgacatc
ttcaccctgcgcgagcgcttcggcaccggcatgcagcagctcaagaaccgcgaaggctgg
ggcgagaagtcggccaacgcgctcttcgacgcgatcgacgccgcgcgccgcgtgccgctg
gcgcggatgcttttcggcctcggcatcccccatgtcggcgaggtcgcggcgcaggtgctg
gcccggcatttcgggacatgggacgcgctgatcgccgccatcgacgccgccgcgagcgag
ccggcagcgcaggccgaggacgacaaggcccgcaaggccgcgctgcccgagagcccgcac
tgggccgagatcaccggcattgacggcatcggcttcaccgttgcggtgagcctcgtcacc
gcgatgagccaggagggggagcgcggctcggtcgaccggctggtcgcgcatctcgatatc
cagcccgccgaaaagccccgcgccgagggcagtcctgtcgccggcaagatagtggtcttc
accggcacgctcgagcgaatgacccgcgccgaggccaaggcgcgggccgaacagctcggc
gccaaggtggcgggctcggtctccggcaagaccgacctgctcatcgccgggcccggcgcg
ggctccaaggccgccaaggccgaggcgctgggggtcgaggttctggacgaggacggctgg
ctcgcgctgatcggcgacgcatga
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