Legionella waltersii: SAMEA4504053_2213
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Entry
SAMEA4504053_2213 CDS
T06599
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lwa
Legionella waltersii
Pathway
lwa03030
DNA replication
lwa03410
Base excision repair
lwa03420
Nucleotide excision repair
lwa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lwa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMEA4504053_2213 (ligA)
03410 Base excision repair
SAMEA4504053_2213 (ligA)
03420 Nucleotide excision repair
SAMEA4504053_2213 (ligA)
03430 Mismatch repair
SAMEA4504053_2213 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lwa03032
]
SAMEA4504053_2213 (ligA)
03400 DNA repair and recombination proteins [BR:
lwa03400
]
SAMEA4504053_2213 (ligA)
Enzymes [BR:
lwa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SAMEA4504053_2213 (ligA)
DNA replication proteins [BR:
lwa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SAMEA4504053_2213 (ligA)
DNA repair and recombination proteins [BR:
lwa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SAMEA4504053_2213 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMEA4504053_2213 (ligA)
MMR (mismatch excision repair)
DNA ligase
SAMEA4504053_2213 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SAMEA4504053_2213 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DUF4796_N
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
SNV07560
LinkDB
All DBs
Position
1:complement(2342751..2344766)
Genome browser
AA seq
671 aa
AA seq
DB search
MIQNEIKEKINLLRDQIRTYDYHYYVLDEPLVPDAEYDRCFKTLQKLESEHPEYLSTDSP
TQRVSGSPSDAFMPISHRQPMLSLSNVFNEEELRAFIKRAMDKLDDQHQELVFACEPKLD
GLAVNITYENGILAHAATRGDGAVGENITANIKTIGSVPLKLRGSIPPKLIEIRGEVYMP
KAGFQEYNDKARALGEKTFANPRNAAAGSLRQLNPEVTANRPIDLYCYGIGACEGFTLPS
SHLAQLDLLRTYGFRVSEDTKREVGINGCLSYYEHMLAKRNELPFEIDGVVYKIDDISLQ
QELGFISRAPRFACAHKFPATEEMTQLLSVDFQVGRTGALTPVARLEPVSVGGVTVSNAT
LHNMDEITRKDIRIGDTVVIRRAGDVIPEVVSVVLERRPTTTQFIELPKQCPVCGSDVVR
EEDEAIARCVGGLYCKAQLKRMMWHFASRKAMYIEGLGSVLIEQLVDAGIVRHVSDLYTM
DLKTLSNLQRMGEKSAKNLLDALEKSKTTTFNRFLYALGIREIGEAGARVLADHFPDIES
IKMATIDELMTLNDIGPVAASYIVHFFSQAHNMEVIDKLLKAGVHWPIKEKKPINMNNPF
YGKTVVLTGTLTSMGREEAKAKLLALGAKVSGSVSAKTNFVIAGGEAGSKLAKATELGVE
VLDEEQFLQRI
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgattcaaaatgaaattaaggaaaaaattaacctactacgcgatcaaataaggacttac
gattatcattattatgttttagatgaaccactcgttcctgatgctgaatacgatcgctgt
tttaaaacattgcaaaagcttgaaagtgaacaccctgagtatttaagtactgattctccc
acccaaagagtcagtggctctccttctgatgcttttatgccaatctcgcatagacagccc
atgttgtcgctatctaatgtattcaacgaggaagagctcagagcttttattaaaagagct
atggataaactggatgatcaacatcaagagttggtgtttgcctgtgaacccaaattggat
ggtttagcagtaaacatcacttatgaaaatggcattttagctcatgctgcaacaagaggt
gatggggctgtaggcgaaaatatcaccgcaaatattaaaaccattggttctgttccttta
aaattaaggggctcaatcccaccgaaactcatcgaaatacgtggcgaggtatacatgccc
aaagccggatttcaagaatacaatgataaagcaagagccttaggtgagaaaacatttgcg
aatccgcgcaatgcagcagcaggaagtttgcgccaattaaacccagaagtcaccgcaaac
agacctattgatctgtattgttatggtattggagcttgtgagggctttactttaccgagt
agccatttggcgcaattggatttactaagaacatatggatttagagtgtctgaggacaca
aagagggaggtcggaataaacggttgtttaagctattacgaacacatgttggcaaaacga
aatgaacttccttttgaaatcgatggagtggtttataaaatagatgatatctcattgcaa
caagagctaggctttatttctcgggcccctcgctttgcttgcgcccataaatttccagca
actgaagaaatgacccaattgctttcagtcgattttcaagtgggtagaacaggggcatta
acgcctgttgctcgattagaacctgtaagtgttggtggagtcactgttagtaatgcaacg
ctccataatatggatgaaattactcgtaaagacattcgtattggagatacagtggttatc
cgccgtgctggtgatgtgatccccgaagttgtttctgtggttttggaaaggagaccaact
acaactcaatttatcgaactacccaagcaatgtcctgtttgtggatcagatgttgtgcgc
gaagaagacgaggcaatagctcgctgtgtgggtggtttgtattgtaaagcacagttaaaa
agaatgatgtggcattttgcttctcgtaaggcaatgtacattgagggtttagggagtgtc
ctcatagagcagcttgttgatgctggaatagtacgacatgtgtctgatttgtacaccatg
gatttaaagactctatccaacttacaaaggatgggagaaaaatccgcaaaaaacctattg
gatgcgttagaaaaaagtaagacaacgacgtttaatcgttttctttacgccttaggaatt
cgcgaaattggagaagcgggagcccgtgttttagcagaccattttccagatatagagtct
attaaaatggcgacaatagatgagttgatgactttaaatgacattggaccagtggcagca
tcttatatcgtgcattttttcagccaagcacataatatggaagttatcgataaactctta
aaagcaggggttcattggcctattaaagaaaaaaaaccgattaacatgaacaaccctttt
tatggtaaaacagtggtattaaccggtactttaaccagtatggggcgtgaagaggccaaa
gcaaaattgttagctttaggggctaaagtcagtggaagtgtttcagctaaaaccaatttc
gtgattgcgggtggagaggcaggctctaagttggcaaaagcaactgaactaggggttgaa
gtgttggatgaagaacaatttttgcagcgtatataa
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integrated database retrieval system
