Leptotrichia wadei: JCM16777_0859
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Entry
JCM16777_0859 CDS
T06741
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lwd
Leptotrichia wadei
Pathway
lwd03030
DNA replication
lwd03410
Base excision repair
lwd03420
Nucleotide excision repair
lwd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lwd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JCM16777_0859
03410 Base excision repair
JCM16777_0859
03420 Nucleotide excision repair
JCM16777_0859
03430 Mismatch repair
JCM16777_0859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lwd03032
]
JCM16777_0859
03400 DNA repair and recombination proteins [BR:
lwd03400
]
JCM16777_0859
Enzymes [BR:
lwd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JCM16777_0859
DNA replication proteins [BR:
lwd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JCM16777_0859
DNA repair and recombination proteins [BR:
lwd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JCM16777_0859
NER (nucleotide excision repair)
GGR (global genome repair) factors
JCM16777_0859
MMR (mismatch excision repair)
DNA ligase
JCM16777_0859
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JCM16777_0859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
Nlig-Ia
BRCT
DNA_ligase_ZBD
PTCB-BRCT
RNA_ligase
HHH
BRCT_2
Tox-MPTase4
Motif
Other DBs
NCBI-ProteinID:
BBM42610
UniProt:
A0A7U6QYZ1
LinkDB
All DBs
Position
complement(898785..900893)
Genome browser
AA seq
702 aa
AA seq
DB search
MNLFNQEKNNENENIDNEKNTLFSDVQEKYTKLRNEIEYHNNLYYNEDKPLISDMEYDAL
MRELKQLEQEYPELLKNEENGESSPTEKIGGTASEKFSKVRHRVPMLSLSNTYNISEIED
FDKRIKKIILSENVKENSKELEYILELKLDGLSISLIYENGVLVQAITRGDGQIGEDVTE
NIMEIKTIPKKLKKNVSLEVRGEIILPISSFNRINQEREDDGEDVFANPRNAASGTIRQL
DKTIVAERGLDCYLYYLVNAENYGINTHLESIEYIEKLGFKTTKIFEKYTDFKELEKSID
KWHNDRKKLDYETDGLVIKVNNFALYETLGYTTKSPRWAIAYKFPAEQVKTKLMDVTFQV
GRTGVITPVAELEAVNLSGSVVKRASLHNFDEIRRKDIKIGDNVIVEKAAEIIPQVVNVA
FDDRTGEEIEIQEPTTCPVCNSELAHEEGLVALKCHNPLCPEKVKRQIAYFVSRDAMNIS
GLGDKIVEKFIELGKIKTIVDIYSLEKYREELENLEKMGKKSVDNLINSIESSKNRDFSK
VLYALGIPFVGKFNANLLTKTFKNIENLKNQSIENLLAVKGIGDKVAFAVNTFLNDENNW
KIITNLKNIGLQFAVDENNSEEIADNPIKDKNFLATGKLQKYKRNDIKDIILSKGGNYLS
AVSKNLDFLIAGEKAGSKLEKAEKLGVRVLTEDEFEKEFLEI
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgaatttatttaatcaagaaaaaaataatgaaaatgaaaatatagataatgaaaaaaat
acccttttttctgatgttcaggaaaaatatacaaaattgagaaatgaaatcgaataccat
aacaatctttattataacgaggacaagcctcttatttcggatatggaatacgacgcttta
atgcgtgaattaaaacagcttgagcaggaatatccagaattgctgaaaaatgaggaaaat
ggagaaagttcgcctactgaaaaaattggaggtactgcgagcgaaaaattttcaaaggta
cgacatcgggtgcctatgcttagtttgtcgaatacttataatatttcggaaattgaggat
tttgacaaaagaatcaaaaaaattattttatctgaaaatgttaaggagaattcaaaggaa
ctagagtatattctggaactgaaactagatgggcttagtataagcctgatttatgaaaat
ggagtgcttgttcaggctataacacggggagatgggcaaattggggaagatgtgactgaa
aatattatggaaattaaaactattcctaaaaaattgaaaaaaaatgtttcactggaagtt
cgtggagaaattattttgccaatttcgagctttaatcgaataaatcaggagcgtgaagat
gatggagaagatgttttcgcaaatcctagaaatgcggcttctgggacaataagacagctt
gataagacaattgttgcagaacgtggacttgactgctatctctattatcttgtaaatgct
gagaattacggaataaatactcatttggagagcattgaatatattgaaaaacttgggttt
aaaacaacaaaaatatttgaaaaatatactgattttaaagaattggaaaaatctatcgac
aaatggcataatgacagaaaaaaacttgattatgaaacagatgggcttgttataaaagta
aataattttgcactttatgaaacgcttggctacacaactaaaagcccacgatgggcaatt
gcctacaaatttcctgctgaacaagtaaaaactaaattaatggacgtaacttttcaagtt
ggaagaactggtgtaatcactcctgttgctgaacttgaagccgtgaatttatcaggttct
gttgtgaaaagagcaagtttacataactttgatgaaattcgcagaaaagatataaaaatt
ggcgataatgtcattgtagaaaaggcggctgaaattattccgcaagttgtaaatgttgcg
tttgacgatagaactggagaagaaattgaaattcaggagccaacaacttgtcctgtctgc
aacagcgaacttgcacacgaagaaggacttgtcgccttaaaatgccacaatccactttgc
cccgaaaaagtcaaacgtcaaattgcctatttcgtttcccgtgacgcaatgaatatttct
ggacttggtgacaaaattgtcgaaaaatttattgaattaggaaaaataaaaacaatagtc
gatatttattcattggaaaaatatcgtgaagaactggaaaatctagaaaaaatgggaaaa
aaaagtgtagataacttgataaatagcattgagtccagtaaaaatcgtgatttttcaaaa
gttctctacgcacttggaattccttttgttggaaaattcaatgcgaatcttttgacaaaa
acttttaaaaatattgaaaatctgaaaaatcagtcaattgaaaatttactggctgtaaaa
ggaattggcgataaagtggcatttgctgtaaatactttcttaaatgatgaaaataactgg
aaaattattacaaatttaaaaaatattggattacaatttgctgttgatgaaaataattca
gaagaaatagcagataatccaataaaagacaaaaacttccttgcaactggaaaactgcaa
aaatacaaacgaaacgacataaaagatataattctgtctaaaggcggaaactatctgtca
gcagtttcaaaaaatctagattttctaattgctggggaaaaggctggaagtaagctggaa
aaggctgaaaaattgggggttcgggtgcttacggaagatgagtttgaaaaggaatttttg
gaaatttaa
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