Listeria welshimeri: lwe1775
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Entry
lwe1775 CDS
T00422
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lwe
Listeria welshimeri
Pathway
lwe03030
DNA replication
lwe03410
Base excision repair
lwe03420
Nucleotide excision repair
lwe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lwe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
lwe1775 (ligA)
03410 Base excision repair
lwe1775 (ligA)
03420 Nucleotide excision repair
lwe1775 (ligA)
03430 Mismatch repair
lwe1775 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lwe03032
]
lwe1775 (ligA)
03400 DNA repair and recombination proteins [BR:
lwe03400
]
lwe1775 (ligA)
Enzymes [BR:
lwe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
lwe1775 (ligA)
DNA replication proteins [BR:
lwe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
lwe1775 (ligA)
DNA repair and recombination proteins [BR:
lwe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
lwe1775 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
lwe1775 (ligA)
MMR (mismatch excision repair)
DNA ligase
lwe1775 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
lwe1775 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
RNA_pol_A_CTD
Zn_ribbon_NUD
DUF7201
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
CAK21193
UniProt:
A0AJL1
LinkDB
All DBs
Position
complement(1802634..1804646)
Genome browser
AA seq
670 aa
AA seq
DB search
MADKKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKIEEAHPEWVTPDSPSKR
VGGEVLEGFTKVAHDTPMLSLANAFNRDDLADFDRRIRDKVGDDIAYMCELKIDGLAVSL
QYENGKYKQGATRGDGTVGEDITANLRTIRSIPMKLQKDFSIEVRGEAFMPKRSFQKLNE
IREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVTTHSEGLDMLE
TLGLKVNKERRLCNNLEEVYAYIDEWTEKRAELAYDIDGIVLKLNDLEQQRQMGTTVKSP
RWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTAVLEPVRVAGTTVSRASLHNEDLITEK
DIRIGDTVLIKKAGDIIPEVIKSITEERSGSEEPFHMPKNCPTCGSELVRLEEEVALRCI
NPKCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFSEHLIKDVADLFFLSKEKLLELERM
GEKSVTNLLASIEASKQNSLEKLLFGLGIRHVGAKAAKSLAVHFETMDNLKMADKETLTS
INDIGEKMADSIVTYFANEEVHDLLEELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLT
GKLEKLTRNDAKALIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLI
EYLPDEGGLN
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaaacggtatgaggagttaataaacatacttgatcaatacagctatgat
tattatgtaattgataatccaacagtagaagacgcggaatacgatcaaaagatgcaagaa
ctacttaaaatagaagaagcgcatcctgaatgggttacacctgattctccttcaaaacga
gttggcggtgaagtgttagaaggttttacaaaagtagcgcatgacacgccaatgttaagt
cttgccaatgcttttaaccgagatgatttggctgattttgaccgccgaattcgcgataaa
gttggtgacgatattgcttatatgtgtgagctgaaaattgatggcttggctgtatcactt
caatatgaaaatggaaaatacaaacaaggggctactcgaggtgacggaacggttggggaa
gatatcactgcaaacttgcgtacgattcgctccattccaatgaaacttcagaaggatttc
tctattgaagtacgcggtgaggcttttatgccaaaacgatctttccaaaaattaaatgag
atacgcgaagaagaaggtcaaatgctatttgcaaacccacgaaatgcagcggcaggctcc
ctcaggcaactagacactaaaattgccgcatcaagaaacctagatatatttctttatgct
gtagctgattttggggaaatgggagttacgactcatagtgaaggcttagacatgttggag
acgctaggacttaaagtcaataaagagcgccgactttgtaataatttagaggaagtctat
gcgtatattgatgagtggacagaaaaacgcgctgagttagcctacgatattgatggtatt
gttttaaaattaaatgatttagaacaacaacgacaaatgggaacaaccgttaaatcacca
cgatggtcgattgcttataaatttccagcagaagaagtgccaactaaactacttgatatt
gaattaaatgttggtagaacgggtgtgataactccaacagctgttctagaaccagtaaga
gttgctggaactactgtcagccgcgcgtcgctccataatgaagatttaattacagaaaaa
gatatccgcattggtgatactgttttaataaaaaaagcaggcgatattattccagaagtc
attaaaagtattaccgaagaacggagcggcagtgaagaaccttttcatatgccaaaaaac
tgcccaacttgcggtagtgaacttgttcgtttagaagaagaagtagcgctcagatgtatt
aatcccaaatgtccagctcaaattaaagaaggacttatccattttgtttctagaaatgcc
atgaacattgatggacttggggaaaaagtgattatacagctattttcagagcatttaatt
aaagatgtagcagatttgtttttcctttccaaagagaaactgttagaattagaaagaatg
ggtgagaaatcggtaaccaatttattggcatccatcgaagcaagtaaacaaaattcgctt
gaaaaattactatttggtttgggaatccgccatgttggtgccaaagcagccaaatcgctt
gccgttcattttgaaacaatggataacttaaaaatggcagacaaagagacactgacaagc
atcaatgatattggggaaaaaatggcagatagtattgtgacttattttgcgaatgaagaa
gtacatgatttattagaagaactaaaaagggctggcgtgaatatgacctatacagggcca
aaactagaagacatgtccgaggaagaacttgtttttgcaggaaaaacagttgttttaact
gggaaactagagaagttaacacgaaatgatgcaaaagcattaatcgaatctctcggcgga
aatgtttctggaagcgtcagtaagaaaacagatgttgttgtagctggcagtgatgctggt
tctaaactagccaaagcggaagaactagcaattcctatttggtccgaagaagacttaata
gagtacttaccagacgaaggtggattaaactaa
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