Listeria weihenstephanensis: UE46_11405
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Entry
UE46_11405 CDS
T05637
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lwi
Listeria weihenstephanensis
Pathway
lwi03030
DNA replication
lwi03410
Base excision repair
lwi03420
Nucleotide excision repair
lwi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lwi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UE46_11405 (ligA)
03410 Base excision repair
UE46_11405 (ligA)
03420 Nucleotide excision repair
UE46_11405 (ligA)
03430 Mismatch repair
UE46_11405 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lwi03032
]
UE46_11405 (ligA)
03400 DNA repair and recombination proteins [BR:
lwi03400
]
UE46_11405 (ligA)
Enzymes [BR:
lwi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
UE46_11405 (ligA)
DNA replication proteins [BR:
lwi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
UE46_11405 (ligA)
DNA repair and recombination proteins [BR:
lwi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
UE46_11405 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UE46_11405 (ligA)
MMR (mismatch excision repair)
DNA ligase
UE46_11405 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UE46_11405 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH
HHH_8
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AQY51578
UniProt:
A0A1S7FVV3
LinkDB
All DBs
Position
complement(2349096..2351111)
Genome browser
AA seq
671 aa
AA seq
DB search
MAERERYEELTRELERLSYEYYVADNPTAPDSLYDQLLHELIGLEEKHPDWITPESPSQR
VGGEVLAGFQKVAHETPMLSLGNAFNEEDLQDFDRRVREKVGDDVAYMCELKIDGLAVSL
QYEDGTYKRGATRGDGTVGEDITSNLRTIRSIPMKLKEPFTIEVRGEAFMPKQSFQSLNE
KREEDGLEVFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVATHSEGLAMLE
KLGLKVNKERRLCQSLDEIFAYIEEWTEARAGLAYDIDGIVIKVDSLEQQQTLGFTAKSP
RWSIAYKFKAEEVETKLLGIELGVGRTGVVTPTAILEAVRVAGTTVGRASLHNEDLIRDK
DIRIGDTVMIKKAGDIIPEVIRVVEEARTGEQVPYHMPTHCPTCESELVRLEGEVALRCI
NPKCPAQLKEGLIHFVSRNAMNIDGLGEKVVVQLFEQELIADVADLFFLSGEKLVELERM
GEKSVQNLLASIDKSRANSLEKLLFGLGIRHVGAKAAKVLAQYFETMDELRKAEKEALIE
VPDIGEKMADSIVAYFENEEVHDLLAKLEKAGVNMVYTGPKLELMPEESLVFANQKVVLT
GKLEHLKREEAKALIESLGGNVTGSVSKNTDVVVAGSDAGSKLAKAEELGIPVWSEQKLM
EYLPDEGGQNE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaagagaacgttatgaagaattgacgagggaacttgaacgacttagttatgaa
tactatgtggcggataatccaaccgcaccagattccctctacgatcaacttttgcatgaa
cttattggactggaagaaaagcaccccgattggataacgcctgaatcgccttcacagcgc
gtaggtggagaggttttggcaggttttcaaaaagtagcacatgaaacgccgatgcttagt
cttggaaatgcgtttaatgaagaggatttgcaggatttcgatcgtcgtgtccgtgaaaaa
gtaggcgatgacgtagcttatatgtgcgagttgaaaattgatggtctggcggtttcacta
cagtatgaggatggaacgtataagcgcggagcaacgcgtggtgatggtacggttggggaa
gatatcacgtctaacttacgaaccatccgctcgattccaatgaagctaaaagaaccgttt
acgattgaagttcgtggcgaagcgttcatgccaaagcagtcatttcaaagcttgaatgag
aaacgagaagaagatgggttagaggtctttgcgaatccgcggaatgcggcggcgggatct
ttacgccagcttgatacaaaaattgcggcttcacgaaatcttgatattttcttatatgct
gttgctgatttcggtgagatgggtgtggcgacacatagtgaaggtttggcgatgcttgag
aaattaggcttaaaagtgaacaaagaacggcgtttatgccaatctttagatgaaattttt
gcatatattgaggaatggacagaggcgcgtgcaggacttgcttatgatattgatggtatc
gtaatcaaagtggatagcttggagcaacagcaaacgcttggttttacggctaaatctcca
cgttggtcgatcgcttataaatttaaagccgaagaagtggaaacaaaattgcttgggatt
gaactcggtgttggtcgaacgggtgtcgtgacgccgactgctattttagaagccgttcgt
gtggctggaacgactgtcgggcgagcatctttgcacaatgaagacttaattcgagacaag
gatatccgaattggcgataccgtgatgattaaaaaagcgggcgatattattcccgaagta
attcgtgtcgtggaagaagcgcgtactggcgaacaagttccttatcatatgccgacacat
tgtccaacatgtgagagtgaactcgtgcgtcttgaaggtgaggttgctttgcggtgtatc
aatccaaagtgcccagctcagctaaaagaaggcttgattcactttgtttcgcgaaatgcg
atgaacatcgatggcctaggcgaaaaagtagtcgttcaactttttgaacaagaattaatt
gccgatgtcgcagatttgtttttcctttcgggcgaaaaactggtagaattagagagaatg
ggtgagaaatccgttcaaaacttgttggcatcgattgataaaagccgtgctaattcacta
gaaaaattattattcggcctcggtattcgacatgttggagcaaaagcagcgaaagtttta
gcgcagtattttgaaacgatggatgaactccgtaaagcagaaaaagaagcgttgatcgaa
gtaccagacatcggtgaaaaaatggcagattcgattgttgcgtattttgagaatgaagaa
gtacatgatttgttagcgaagttagaaaaagcaggcgtcaatatggtttatacaggtcct
aagttggaactaatgccagaagagtcacttgtttttgcgaatcaaaaagtcgttctaacg
gggaaattagagcatttgaaacgcgaagaagccaaagcgttaattgaaagtttaggcgga
aatgtaacggggagcgtcagtaaaaatacagatgttgttgtggcaggcagtgatgctgga
tctaaactggctaaagccgaggaattgggcataccagtgtggagcgagcaaaaattaatg
gaatatttaccagatgaaggtggtcaaaacgaatga
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integrated database retrieval system
