Leptonychotes weddellii (Weddell seal): 102740030
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Entry
102740030 CDS
T08708
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
lww
Leptonychotes weddellii (Weddell seal)
Brite
KEGG Orthology (KO) [BR:
lww00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lww03036
]
102740030 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
lww03400
]
102740030 (SMCHD1)
Chromosome and associated proteins [BR:
lww03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
102740030 (SMCHD1)
DNA repair and recombination proteins [BR:
lww03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
102740030 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
DUF3447
Motif
Other DBs
NCBI-GeneID:
102740030
NCBI-ProteinID:
XP_006727838
UniProt:
A0A2U3X921
LinkDB
All DBs
Position
Unknown
AA seq
2002 aa
AA seq
DB search
MAAAGGGGPSVGTGEDGGGDGYRTVYLFDRREKESELGDRVLQVEERSDYARFRASVCQT
LGISPEEKFVITTTSRKEITCDNFDDTVKDGVTLYLLQSVNQLLLTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRRIQIKLLFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDE
RFLHHLILEEKEKDSFTAVVITGVQPEHIQYLKNYFLLWTRQLAHIYHYYIHGPKGNEKR
TSKEVGPFNNIDIEISMFEKGKAPKIVNLREIEDDMQTLYINTAADSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTSFKGVITRPDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEIKT
VPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSSNGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLMDPPFRVGVPFNI
PLEFQDEFGHTSQLGNDIQPVFEASGLSLHYEEITRGPNCVIRGVTAKGPVNSCQGKNFN
LKVILPGLKEDTQILKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEILDESDNITTQ
PKLIVHCKFLGAPNLPIYVVDCSSSGTSILTGSAIQVQNIKKDQTLKAKIEIPSCKDVAP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGEREIHI
TSTLADKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTVQMGQELQGEIVVIVTDQYGNQIQAFSPSSLSALGIAGIGLDS
SHLKTTFQENTQSISVKGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWP
ELKESIPVINGRELQNPLIVQLCDQWDNPAPVSQVKISLMKANNLKLTPSNQQHKTDERG
RANLGVFSVYAPRGEHMMQVRAIYNKNIIEGPIIKLIILPDPEKPIRLNVKYDKDASFLA
GGIFTDFMITVISEDDSIIKNINPARISMKMWQLSNSGNRPPANAETFSCNKIKDNDKED
GCFYFRDKAIPNKVGTYCIQFGFMMDKANILNSEQVIVDVVPNQPVKLVPKIQPATPAVS
NVRSVASRTLVKDLHLTITDDYNNQTGIDLVGTVVATIKGSNEEDTDTPLFIGKVRTLEF
PFLKGSAEITNLVLAENSPGRDSTEYFIIFDPQLPALSRTLEPYILPFMFYNDVKKQQQM
AALTKEKDQLSKNIIMYRSLFEASNQLLDEMKCQVEEAKLKEAQLQNELKTHNIDIPTTQ
QMPHIEALLKRKLSEQEELRKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMVISW
HLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGRLYFKP
IGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRD
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKQCLVLGEQIDLLQQYRTAVNKLNSVI
EDLNRQLEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSLRHPAKVEMTDCP
VPPKRMRREASRQNRIITKSDV
NT seq
6009 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcggcgggccctcggtggggaccggagaggacggcggaggcgac
ggctacaggacggtgtacttgtttgaccggcgcgagaaggagtccgagctcggggaccgg
gtgctgcaggtcgaggagcgctcggactacgcaaggttccgcgcctctgtgtgtcagaca
cttggcatttcacctgaagagaaatttgttattacaacaacaagtaggaaagaaattacc
tgtgataattttgatgacactgttaaagatggagtcactctatacctgctacagtcagtc
aatcagttactactaacagctacaaaagaacgaattgacttcctacctcactatgacaca
ctggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttgccattt
gctcttgcagaattaattgacaattcattgtctgctacgtctagaaacactggtattaga
agaatacagatcaaattgctttttgatgaaacacaaggaaaacctgccgttgcagtgata
gataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtataggttgtca
aaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcgtccagtacca
gtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacaatcagccagaatgataagcaaacctgcagattcccaagatgttcat
gaacttgtgctttctaaagaagattttgagaagaaggagaaaaataaagaggcaatatat
agtggatatattagaaacagaaagccatctgattctgttcacattacaaatgatgatgaa
agatttctacatcatcttatcttagaggagaaggaaaaagatagctttactgctgtggtt
atcacaggagtacaaccagaacacatacagtatttgaaaaattatttccttctttggaca
agacagttagcgcatatttatcattactatattcatggcccaaaaggaaatgaaaaacgt
acatcaaaagaagttggacctttcaacaacattgatattgaaatttctatgtttgaaaag
gggaaggcacctaagattgtcaacctaagggaaatagaagatgacatgcagacgttgtat
ataaacacagcagctgatagttttgagttcaaggctcatgttgaaggagatggtgtagtg
gaagggattattcgatatcaccctttcttatatgatagagaaacttaccccgatgatcca
tgctttccatcaaaattaaaagatgaagatgatgatgatgattgtttcatacttgagaaa
gcagcaagaggaaaaaggcctatttttgaatgtttttggaatggacggctaataccatat
acatctgttgaagactttgactggtgtactcctccaaagaagagagggcttgcaccaatt
gaatgttacaatagaatatctggtgcattattcactaatgacaaattccaggtcagcaca
aataaactgacttttatggatcttgagctaaaattgaaagataagaacaccctttttaca
aggattttaaatggacaggagcagcgaatgaaaattgacagagaatttgctttatggctg
aaggactgtcatgaaaagtatgacaaacaaataaaatttacatcttttaaaggagtaatt
acacgtcctgatcttccttctaaaaagcagggcccctgggcgacatactcagcaatagaa
tgggatggaaaaatatacaaagcaggacagctggtcaagacaatcaagacacttcctctc
ttttatggaagcatagtaaaattttttctttatggtgatcatgatggagaagtatatgcc
acaggaggagaggttcagattgcaatggaacctcaggcgctgtatgatgaaataaaaact
gtgccaattgcaaaacttgataggacagttgctgagaaagctgtgaaaaaatatgtagaa
gatgaaatggcaaggctccctgatagattgtcagtaacttggcctgaaggagatgaatta
ttgccaaatgagattaggcctgctggaacccccattggtgcattaagaattgaaatactg
aataaaaaaggagaggcaatgcaaaagcttccaggaacaagtcacggagggtcaaagaaa
ctcctggttgagctcaaagttatattacattcttcaaatggaaataaagaaatcatttca
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcag
aagttggggaattatacattgaaattacaagttgtattgaatgaaagtaatgcagacact
tatgcaggaagaccactaccatcaaaggcaattaaattttctgttaaagagggtaaacca
gagaagttttcatttggtcttatggatcctccttttcgtgttggagtcccattcaatatc
cctctggagtttcaggatgaatttggtcatactagtcaactaggaaatgatattcagcca
gtttttgaagcaagtggtttatctttacattatgaagaaataaccagaggaccgaattgt
gtgattcgaggtgttacagctaagggccctgtaaactcttgtcaaggcaagaattttaat
ttgaaggttattctgccgggtttaaaagaagacacacagattttaaaaattagattacta
ccaggtccccctcatcgattgaaagtgaaacctgattctgaaattttagttatagaaaat
ggaacagctttcccatttcaggtagaaattttggatgaatcagacaatataacaacacaa
ccaaaattgattgttcattgtaagttcttaggtgctccaaatcttcccatctacgttgta
gattgtagcagttctggaaccagtattttaacaggatctgcaattcaagtacagaacatt
aaaaaagaccagactcttaaagcaaaaattgaaatacctagttgtaaagatgtggcaccc
gtggagaagactattaagttgcttcctagtagccatgttgcaagattacagatattcagt
gtggaaggacaaaaggcaatccagatcaaacatcaggatgaggttaattggatagcaggc
gatattatgcataatcttatttttcaaatgtatgacgaaggagaaagagaaattcatata
acatcaactttagcagataaaattaaagttaattggactcctgagattaacaaagaacac
ttgctacagggtctgcttcctgatgtacaagtaccaacatctgtgaaagatatgcgttat
tgccaggtttcattccaagatgatcatgtgtctttggaaagtgcatttacagtaagacca
cttcctgatgaacctaaacatctaaaatgtgagttaaaaggaggaaaaacagtacagatg
ggccaagagcttcaaggagaaatagttgtaatagttacagatcagtatggaaatcagatt
caggcattttcaccaagttctttatctgccttgggaattgctgggattggacttgatagc
tctcatttgaaaactacctttcaggaaaatacacaaagtataagtgtaaaaggcatcaag
tttattccaggccctcctggaaataaggatctttgttttacttggcgtgaattttctgac
tttattcgagtgcagctaatttctggaccaccagcaaaacttcttcttatagactggcca
gaattaaaggagtccattccagtgattaatggaagagaactacagaatcctctcattgtt
caactttgtgatcagtgggataatccagcacctgtatcacaggttaagataagtctcatg
aaagctaacaatttaaagctcactccttcaaaccaacagcataaaacagatgaaaggggc
agggctaatttgggagtgttcagtgtttatgctcctagaggagaacatatgatgcaggtt
agagccatctataacaagaatatcatagaaggacctataattaagttaataattcttcca
gaccctgaaaaacctattcgtctcaatgttaaatatgacaaagatgcttcctttttagca
gggggtattttcactgattttatgattactgttatttctgaagatgacagtatcattaaa
aatattaatccagcacgtatttccatgaaaatgtggcagctgtctaacagtgggaaccga
ccaccagcaaatgcagaaacatttagttgtaataaaataaaagataatgacaaggaagat
ggctgcttctacttcagggataaagcaattcctaacaaagtgggaacatattgtatccag
tttgggtttatgatggataaagcaaatattcttaacagtgaacaggttatagttgatgtt
gtacctaaccaacctgtgaagttagttcctaaaattcagccagctacaccagctgtttca
aatgttcgctcagttgccagtaggaccttggtcaaagatttacatcttactattacggat
gactacaacaatcagactggaattgatttggttggcactgtagtagctaccattaaaggt
tctaatgaggaagatacggatacaccactctttattgggaaagtgagaacactcgaattt
ccctttctgaaaggttcagctgaaattacgaatctagtgctggcagaaaatagtcctgga
agggatagtactgaatattttattatatttgaccctcagctaccagctctatcaagaacg
ttagaaccatacatcctaccatttatgttttacaatgatgttaagaagcagcaacaaatg
gcagcacttacaaaagaaaaggaccagttatctaagaatattataatgtatagaagttta
tttgaagccagtaatcagcttcttgatgaaatgaagtgccaagtcgaagaggcaaaatta
aaagaggctcagttgcaaaatgaattaaagacacataatattgacattcctacaacacaa
cagatgccacatattgaagcacttttgaaaagaaagttatcagaacaggaagaactgagg
aaaaaacctagaagatcatgtactcttccaaactatactaaaggcagtggagatgttttg
ggaaagattgcacacctggcacaaattgaagatgatagagctgcaatggttatttcttgg
catctggcaagtgacatggactgtgttgtcaccctgaccactgatgctgcacgtcgtatc
tatgatgaaactcaaggtcgtcagcaggtgttgcccctggattctatttataagaagact
cttccagattggaaaagacctctacctcattaccgaaatggaagattgtattttaaaccc
attggagatccagtctttgcccgagatttgttaacatttccagataatgtagaacattgt
gaaacagtatttggtatgctgttaggagacaccattattttggataatttggatgctgcc
aatcattatagaaaagaggttgttaaaattacacactgtcctacactgctcaccagagat
ggagatcgcattcgaagtaacggaaagtttgggggccttcagaataaagctcctccaatg
gataaacttcggggaatggtatttggagctccaataccaaaacagtgcctggtcttaggg
gaacaaatagatcttcttcaacagtatcgtactgctgtgaacaagttgaacagtgtgatc
gaggaccttaaccgtcagttagagtaccttcacactcctgatatgaagaagaaaaaacaa
gaacttgatgaacaagagaaaaatctgaaactaattgagcaaaaactaggtatgactccc
acacgtaagtgtaatgactcattgcgccatccagcaaaggttgaaatgacagattgtcca
gttcctcctaaaagaatgagaagagaagcttcaagacaaaataggattataaccaaatca
gatgtgtga
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integrated database retrieval system
