Luteimicrobium xylanilyticum: KDY119_02421
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Entry
KDY119_02421 CDS
T06254
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lxl
Luteimicrobium xylanilyticum
Pathway
lxl03030
DNA replication
lxl03410
Base excision repair
lxl03420
Nucleotide excision repair
lxl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lxl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KDY119_02421 (ligA)
03410 Base excision repair
KDY119_02421 (ligA)
03420 Nucleotide excision repair
KDY119_02421 (ligA)
03430 Mismatch repair
KDY119_02421 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lxl03032
]
KDY119_02421 (ligA)
03400 DNA repair and recombination proteins [BR:
lxl03400
]
KDY119_02421 (ligA)
Enzymes [BR:
lxl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KDY119_02421 (ligA)
DNA replication proteins [BR:
lxl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KDY119_02421 (ligA)
DNA repair and recombination proteins [BR:
lxl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KDY119_02421 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KDY119_02421 (ligA)
MMR (mismatch excision repair)
DNA ligase
KDY119_02421 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KDY119_02421 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QFU98896
UniProt:
A0A5P9QCD0
LinkDB
All DBs
Position
complement(2697455..2699917)
Genome browser
AA seq
820 aa
AA seq
DB search
MSDELTREPLDAPPTAGASAPTAATEASPDLADAHRRWAELAESIEADQFAYYIKDAPVS
SDADYDARLRELQALEDAFPELRSPDSPTQRVGGTFSTEFAAVEHVERMLSLDNAFNEED
VRAWADRVAKELGHDADGTAVPDLHYLCEVKIDGLAIALLYERGRLVRAATRGDGRTGED
VTLNVRTITTVPQTLAGDPATHPHLIEIRGEVFFPVAEFETLNAAQVEAGKAPFANPRNA
AAGSLRQKDPRVTASRPLRMYAHGVGALQWEEGEHAQLERQSQAYELFESWGVPVSSHNR
VVTGIPAVLEMIEYYGTHRHDIEHELDGLVAKVDELALQRRLGATSRAPRWAIAYKYPPE
EVNTKLLDIRVNVGRTGRVTPYGVMEPVKVAGSTVEMATLHNASEVERKGVLIGDTVVLR
KAGDVIPEIVGPVAALRDGTERAFVMPTVCPSCGTPLAPAKEGDVDIRCPNQRSCPSQLR
ERLFHAAGRGAFDIEALGWEAAVALTDPELDRPTDPATYRPGGDVDAPAPDALPEPQRPV
LATEAGLFDLTPEDLREVRVWREIKKKGVGTGLWEDRLYFWTKPTGTKPSAPHANTTRLF
AELDKARDQPLWRVLVALSIRHVGPTAARALAQHFGSLDAIEEAATREPADADEDATKPP
AELAAVEGVGPTIAVAVRDWFGDVDDPDNWRREIVDRWRAAGVRTADERDESVERTLEGL
TVVVTGSLEGFTRDGAKEAILARGGKASGSVSKKTDFVVVGPNAGSKETKARELGRPILD
EGGFVALLEGGPAAVTPGTSADDAATDDAAPGLELEADEE
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacgagctgacccgcgagcctctggacgcgcccccgaccgccggtgcgtccgca
ccgaccgccgccaccgaggcgagccccgacctcgccgacgcgcaccgacgctgggcggag
ctggccgagagcatcgaggccgaccagttcgcgtactacatcaaggacgcgccggtcagc
tcggacgcggactacgacgcgcgcctgcgcgagctgcaggccctcgaggacgcgttcccg
gagctacggagccccgactcgccgacgcagcgcgtgggcggcacgttctcgacggagttc
gcggccgtcgagcacgtcgagcgcatgctcagcctggacaacgcgttcaacgaggaggac
gtgcgggcctgggccgaccgcgtcgccaaggagctcggccacgacgccgacgggacggcg
gtgcccgatctccactacctgtgcgaggtcaagatcgacggcctcgcgatcgctctcctg
tacgagcgcgggcgtctggtgcgggccgcgacgcgcggcgacggtcggacgggcgaggac
gtgacgctcaacgtccgcaccatcacgaccgtcccgcagaccctcgccggcgaccccgcg
acgcatccgcacctgatcgagatccgcggcgaggtgttcttccccgtcgcggagttcgag
acgctcaacgccgcccaggtcgaggccggcaaggcgccgttcgcgaacccccgcaacgcg
gcggcgggctcgctgcgccagaaggacccgcgcgtgacggcgtcgcgcccgctgcgcatg
tacgcgcacggcgtgggtgcgctgcagtgggaggagggggagcacgcgcagctcgagcgc
cagtcgcaggcctacgagctcttcgagtcgtggggggtgccggtctcgagccacaaccgc
gtggtcaccggcatcccggccgtcctcgagatgatcgagtactacgggacgcaccggcac
gacatcgagcacgagctcgacggtctcgtggccaaggtcgacgagctcgccctccagcgc
cggctcggagcgaccagccgtgcgccacggtgggccatcgcgtacaagtacccgcccgag
gaggtcaacaccaagctcctcgacatccgcgtcaacgtgggtcggaccggccgcgtcacg
ccctacggcgtgatggagcccgtcaaggtcgcgggatcgacggtcgagatggcgaccctc
cacaacgcgagcgaggtcgagcgcaagggcgtgctcatcggcgacaccgtggtgctgcgc
aaggcgggcgacgtgatccccgagatcgtgggaccggtcgcggcgctgcgcgacgggacc
gagcgcgcgttcgtcatgccgaccgtctgcccgtcgtgcggcacgcctctcgcgcccgcg
aaggagggcgacgtcgacatccggtgccccaaccagcgttcgtgcccgtcccagctccgc
gagcggttgttccacgccgcgggccgcggcgcgttcgacatcgaggcgctcggctgggag
gcggcggtcgcgctgacggaccccgagctcgaccggccgaccgaccccgcgacgtaccgg
cccggcggtgacgtcgacgcgccggcgcccgacgcgctgcccgagccgcagcggccggtc
ctcgcgaccgaggccggcctgttcgacctcacgcccgaggacctgcgcgaggtccgcgtc
tggcgggagatcaagaagaagggcgtcgggaccggcctgtgggaggaccgcctctacttc
tggaccaagcccacgggcaccaagccgtccgcgccccacgccaacacgacccgcctgttc
gccgagctcgacaaggcgagggaccagccgctgtggcgggtcctggtcgcgctgtcgatc
cgtcacgtcggcccgacggcggctcgcgccctcgcgcagcacttcggctcgctcgacgcg
atcgaggaggcggcgacgcgtgagcctgcggacgccgacgaggacgccaccaagcccccg
gccgagctcgcggccgtcgagggggtcggcccgaccatcgccgtcgcggtccgcgactgg
ttcggcgacgtggacgaccccgacaactggcgccgcgagatcgtcgaccgctggcgggcc
gcgggggtccgcacggctgacgagcgcgacgagtccgtcgagcggacgctcgaggggctc
acggtcgtcgtgacgggttcgctcgagggcttcacgcgcgacggcgccaaggaggcgatc
ctcgcgcgcggcggcaaggcgtcggggtccgtgtcgaagaagacggacttcgtggtcgtc
gggccgaacgccgggagcaaggagaccaaggcgcgcgagctcggtcgcccgatcctcgac
gagggcgggttcgtcgcgctgctcgagggcggccccgccgcggtgacgcccggaacctcc
gcggacgacgccgcgaccgacgacgccgcgcccgggctcgagctcgaggccgacgaggag
tag
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