Leifsonia xyli subsp. xyli CTCB07: Lxx14380
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Entry
Lxx14380 CDS
T00190
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lxx
Leifsonia xyli subsp. xyli CTCB07
Pathway
lxx03030
DNA replication
lxx03410
Base excision repair
lxx03420
Nucleotide excision repair
lxx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lxx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Lxx14380 (ligA)
03410 Base excision repair
Lxx14380 (ligA)
03420 Nucleotide excision repair
Lxx14380 (ligA)
03430 Mismatch repair
Lxx14380 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lxx03032
]
Lxx14380 (ligA)
03400 DNA repair and recombination proteins [BR:
lxx03400
]
Lxx14380 (ligA)
Enzymes [BR:
lxx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Lxx14380 (ligA)
DNA replication proteins [BR:
lxx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Lxx14380 (ligA)
DNA repair and recombination proteins [BR:
lxx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Lxx14380 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Lxx14380 (ligA)
MMR (mismatch excision repair)
DNA ligase
Lxx14380 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Lxx14380 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AAT89251
UniProt:
Q6AEE5
LinkDB
All DBs
Position
complement(1483761..1486004)
Genome browser
AA seq
747 aa
AA seq
DB search
MAADARAEAQGLTTRILELRDAYYELDTVLVSDEEYDRMLRRLEELERLHPELQSQDSPT
QTVGGRAQTTLFAPVEHAERMLSLDNVFSFEAFEAWAAKIERDAGRRVDYLCELKIDGLA
INLRYENGVLVTAATRGDGVVGEDVTENIRHIPAITQRLSGAGPFPPVVEVRGEVFFPVA
KFEELNANQQAAGERVFANARNAASGSLRQKAEGKNPAQRRLMRDRLGRLRMLVHGIGAW
PNPPVATQSGVYELLRSWGLPTSAHGRVFGTVQEAADFIGRSAERRDTVEHEIDGVVIKV
DELVLHDELGATSRAPRWAIAYKYPPEQVNTKLLDIVVSVGRTGRATPFAVMEKVKVAGS
EVRQATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEVLGPVVELRDGTEREFAMPTDCPEC
GTPLAPAKEGDIDLRCPNAEFCPAQVRGRVEHIGSRGGLDIEALGEVAAAALTQPRFPER
APLPTEAGLFGLRLEDLFPIEVVVRDSETGLPKLTETGVEKVDAPFRRRRQKKDGAFDPE
AEAFDGDEIAVPSKSAIELLANLRAARTKPLWRILVSLNIRHVGPVAARALADHFGSLDA
IRAASRDELAAVDGVGGIVADAVLSWFEIGWHCEIVENWARDGVQFAIPGHPGPGRADTG
GGVLSGLTVVATGSLEGYTREAAQEAIVAAGGKAASSVSKKTDFVAAGPGAGSKLAKAEE
LGVRVLDAAQFTILVEQGPGALPEVAE
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
gtggcggcggacgctcgagcggaggctcaggggctgacgacgcggatactggaactgcgg
gacgcttactacgagctggacacggtgctcgtcagcgatgaggagtacgaccggatgctg
cggcggctcgaagagctggagcgcctgcatcccgagttgcagagccaggacagcccgacg
cagacggtcggcgggcgggcgcagaccacgctgttcgcaccggtggagcacgccgagcgg
atgctgagcctcgacaatgtgttctcattcgaggccttcgaggcctgggcggcgaagatc
gagcgggacgccggccggcgggtggactacctctgcgagctcaagatcgacggtctggcg
atcaatctgcgctacgagaacggcgtgctggtgacggctgcgacccgcggcgacggcgtg
gtcggcgaggacgtcaccgagaacatccgccacatcccggccatcacacagcggctctcc
ggagcgggcccgttcccgccggtcgtggaggttcgcggcgaagtcttcttcccggtcgcg
aaattcgaagaactgaacgccaaccagcaagcggcgggcgagcgggtgttcgcgaacgct
cgcaacgcggccagtggctcgctgcggcagaaggcggagggtaagaaccccgcgcagcgg
aggctcatgcgcgatcggctgggccggctgcgcatgctggtacacggcatcggcgcgtgg
cccaacccgccggtggccactcaatccggggtgtacgagcttctgcgctcctggggcctg
cccacctcggcgcacggccgcgtgttcgggacggtgcaggaggccgccgacttcatcggg
cgctccgccgagcgccgggacaccgtcgagcacgagatcgacggcgtcgtgatcaaggtc
gacgaactcgtgctccacgacgagctgggagcgacgtcgcgggccccacgctgggcgatc
gcttacaagtacccgcccgagcaggtcaacaccaagctcctcgacatcgtcgtcagcgtc
ggccgcaccgggcgggcgacgccgttcgcggtcatggagaaggtcaaggtcgcgggttcc
gaggtgcgtcaggcgacgctgcacaatcaggatgtggtcaaggccaagggcgtgctgatc
ggcgacacggtggtgctgcgtaaggcgggcgacgtcatccccgaggtgctcggcccggtg
gtcgagctgcgcgacggcaccgagcgcgagttcgcgatgccgacggactgcccggagtgc
ggcacgccgctggcccccgccaaagagggcgacatcgacctgcgctgcccgaacgcggag
ttctgcccggcgcaggtgcgggggcgggtggagcacatcggctcgcgcggcgggctcgac
atcgaggcgctcggggaggtggctgccgcggccctgactcagccgcgcttccccgagaga
gcgccgctgccgaccgaggcgggactgttcgggctccgattggaggacctgttcccgatc
gaggtcgtggtgcgggattctgagaccgggctgccgaaactgaccgagacgggcgtcgaa
aaggtagacgccccgttccgtcgccggcgacagaagaaggatggagcgttcgaccccgag
gcggaggcgttcgacggcgacgagatcgcggtcccgtccaagagcgcgatcgagcttctg
gccaacctgcgggcggcgcgcaccaagccgctgtggcgtattctggtctctctcaacatc
cgtcacgtcggcccggtcgcggctcgcgctctggcggaccatttcggatcgctcgacgcg
atccgggctgcatcgcgcgacgagctggcggcggtggacggtgtcggcggcatcgtcgcg
gacgctgtgctgtcctggttcgagatcggctggcactgcgagatcgtcgagaactgggct
cgtgacggcgtgcagttcgcgataccgggccaccccggccccgggcgggcggacacgggg
ggcggagtgctctccggtctcacggtcgtggcgacgggatcgctggaagggtacacccgc
gaggccgcgcaggaggcgatcgtcgcggccggggggaaagccgcgtccagcgtgtcgaag
aagaccgatttcgtcgcggccggtcccggggcggggtccaaactcgccaaggcggaagaa
ctgggggtgcgcgttctcgatgccgcgcagttcacgattctggtggaacagggcccaggc
gccctcccggaggtcgcagagtag
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