Leifsonia xyli subsp. cynodontis DSM 46306: O159_10690
Help
Entry
O159_10690 CDS
T02852
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lxy
Leifsonia xyli subsp. cynodontis DSM 46306
Pathway
lxy03030
DNA replication
lxy03410
Base excision repair
lxy03420
Nucleotide excision repair
lxy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lxy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
O159_10690
03410 Base excision repair
O159_10690
03420 Nucleotide excision repair
O159_10690
03430 Mismatch repair
O159_10690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lxy03032
]
O159_10690
03400 DNA repair and recombination proteins [BR:
lxy03400
]
O159_10690
Enzymes [BR:
lxy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
O159_10690
DNA replication proteins [BR:
lxy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
O159_10690
DNA repair and recombination proteins [BR:
lxy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
O159_10690
NER (nucleotide excision repair)
GGR (global genome repair) factors
O159_10690
MMR (mismatch excision repair)
DNA ligase
O159_10690
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
O159_10690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
RNA_lig_T4_1
Motif
Other DBs
NCBI-GeneID:
17048077
NCBI-ProteinID:
AGW41172
UniProt:
U3P8A9
LinkDB
All DBs
Position
1008308..1010575
Genome browser
AA seq
755 aa
AA seq
DB search
MAETTEDQVTADAWAEAQGLTTRILELRDAYYERDTVLVSDEEYDRMLRRLEELERLHPE
LQSHDSPTQTVGGRAQTTLFAPVEHAERMLSLDNVFSFEEFEAWAAKIERDAGRRVDYLC
ELKIDGLAINLRYENGVLVTAATRGDGVVGEDVTENIRHIPAIPQRLSGAGPFPPVVEVR
GEVFFPVAKFDELNANQQAAGERVFANARNAASGSLRQKAEGKNPAQRALMRDRLGRLHM
LVHGIGAWPNPPAATQSGVYELLRSWGLPTSTQYRVLGTVQEVDDFIGRSGERRDTVEHE
IDGVVVKVDELALHDELGATSRAPRWAIAYKYPPEQVNTKLLDIVVSVGRTGRATPFAIM
EKVKVAGSEVRQATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEVLGPVVELRDGTEREFA
MPQSCPECGTELAPAKEGDIDLRCPNAQFCPAQVRGRVEHIGSRGGLDIEALGEVAAAAL
TQPRFPERAPLPTEAGLFGLRLEDLFPIEVVVRDSETGLPKLTETGAEKVDTPFRRRRQK
KDGAFDPEAEAFDGDETSVPSKNAIELLANLRMARTKPLWRILVSLNIRHVGPVAARALA
DHFGSLDAIRAASRDDLAAVDGVGGIIADAVLAWFEIAWHREIVENWARDGVQFATPDHP
GPGRADTAGGVLSGLTVVATGSLEGYTREAAQEAIVAAGGKAASSVSKKTDFVAAGPGAG
SKLAKAEELGVRVLDAAQFAILVEQGPSALPEVAG
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
gtggcggagacgacggaagaccaggtgacggcggatgcttgggcggaggctcaggggctg
acgacgcggatactggaactgcgggacgcttactatgagcgggacacagtgctcgtcagc
gacgaggagtacgaccggatgctgcggcggctcgaagagctggagcgcctgcatcccgaa
ctgcagagccacgacagcccgacgcagacggtcggcgggcgggcgcagaccacgctgttc
gcaccggtggagcacgccgagcggatgctgagcctcgacaacgtgttctcgttcgaggag
ttcgaggcgtgggcggcgaagatcgagcgggatgccgggcggcgggtggactatctctgc
gagctcaagatcgacggtctggcgatcaatctgcgctacgagaacggcgtgctcgtgacg
gctgcgacccgcggcgacggcgtggtcggcgaggatgtcaccgagaacatccgccacatc
ccggccatcccgcagcggctctccggggcgggcccgttcccgccggtcgtggaggttcgc
ggcgaagtcttcttcccggtcgcgaaattcgacgaactgaacgccaatcagcaggcggcg
ggcgagcgggtgttcgcgaacgctcgcaacgcggccagcggctcgctgcggcagaaggcc
gagggcaagaaccccgcgcagcgggcgctcatgcgcgatcggctgggccggctgcacatg
ctggtacacggtatcggcgcgtggccgaacccgccggcagccactcaatccggggtgtac
gagctgctgcgctcctggggcctgcccacctcgacgcagtaccgcgtgctcgggacggtg
caggaggtcgacgacttcatcgggcgctccggcgagcgccgggacaccgtcgagcacgag
atcgacggcgtcgtcgtcaaggtcgacgaactcgcgctccacgacgagctgggagcgacg
tcgcgggccccgcgctgggccatcgcgtacaagtatccgcccgagcaggtcaacaccaag
ctcctcgacatcgtcgtcagcgtcggccgcaccgggagggcgacgccgttcgcgatcatg
gagaaggtcaaggtcgcgggttccgaggtgcgccaggcgaccctgcacaaccaggatgtc
gtgaaggccaagggagtgctgatcggcgacacggtggtgctgcggaaggcgggcgatgtc
atccccgaggtgctcggcccggtggtcgagctgcgtgacggcaccgagcgcgagttcgcg
atgccgcagagctgtccggagtgcggcacggagctggcgccggcgaaggaaggcgacatc
gacctccgctgtccgaacgcccagttctgcccggcgcaggtccgcgggcgggtggagcac
atcggttcgcgcggcgggctcgacatcgaggcgctgggggaggtcgcggcggccgccctg
acccagccgcgcttccccgagagagcgccgctgccgaccgaggcgggactgttcgggctc
cgattggaggacctgttcccgatcgaagtcgtggtgcgggattcggagaccgggctgccg
aaactgaccgagacgggcgccgaaaaggtagacaccccgttccgccgccggcggcagaag
aaggacggagcgttcgaccccgaggcggaggcgttcgacggcgacgagacctcggtcccg
tccaagaacgcgatcgagctgctggccaacctgcggatggcgcgcaccaagccgctgtgg
cgcatcctggtttccctcaacatccgtcacgtcggcccggtcgcggctcgcgctctggcg
gaccatttcggatcgctcgacgcgatccgtgccgcatcgcgcgacgacctggcggcggtg
gacggtgtcggcggcatcatcgcggacgctgtgctggcctggttcgagatcgcctggcac
cgcgagatcgtcgagaactgggctcgcgacggtgtgcagttcgcgacaccggaccacccc
ggccccgggcgggcggacacggcgggcggagtgctctccggtctcacggtcgtggcgacg
ggatcgctggaggggtacacgcgcgaggccgcgcaggaggcgatcgtcgcggccgggggg
aaagccgcatccagcgtgtcgaagaagaccgatttcgtcgcggcgggtcccggggcgggc
tccaaactcgccaaggcggaagaactgggggtgcgcgttctggacgccgcgcagttcgcg
attctggtggaacagggcccgagcgctctcccggaggtcgcaggctag
DBGET
integrated database retrieval system
