Lysobacter yananisis: RDV84_12310
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Entry
RDV84_12310 CDS
T09342
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
lya
Lysobacter yananisis
Pathway
lya00300
Lysine biosynthesis
lya00550
Peptidoglycan biosynthesis
lya01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lya00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RDV84_12310
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RDV84_12310
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
lya01011
]
RDV84_12310
Enzymes [BR:
lya01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
RDV84_12310
Peptidoglycan biosynthesis and degradation proteins [BR:
lya01011
]
Precursor biosynthesis
Amino acid ligase
RDV84_12310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
Motif
Other DBs
NCBI-ProteinID:
WMT05824
UniProt:
A0ABY9PFW6
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All DBs
Position
2901605..2903116
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AA seq
503 aa
AA seq
DB search
MLLSELLPDVAGIPGDLRIGGLVMDSRAVRAGDAFVAIAGFGAHGLKFVEQARASGAAAI
LFEPPAPDDLPAPADAIAVPGLRSRLGEMGDAFHGRPSASMRVVGVTGTNGKTSTVQLIA
QAWHLLGLSCGTIGTLGAGLYGQVVPNGFTTPLVLPLHELLAGMRDAGAQAVAMEVSSHA
LDQGRVAGVHFDVGVFTNLTRDHLDYHGDMASYGAAKARLFGWDGLKAAAINLDDEFGRE
LLAQLPKRVRGIGLSSRGQAGASVRADRLSFDSRGIGFDLVVGGKAHPVASRLLGRFNVD
NLLAVAGALYALEQEPATIARVLSQLEPIHGRMNRLGGDGRLPLVVIDYAHTPDALEQAL
ASLRAHAQARLICVFGCGGERDRGKRPQMAAIAEHGADLAIVTDDNPRGEDGDVIVADIL
EGFRDPQRALVLRDRRAAIERAIAEAGPDDIVLVAGKGHEPYQEIHGVRHPFDDTLIARA
ALEARAPHMDVQVPRAQDGQERP
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgctcctgtccgagctgctgcccgacgtcgccggtatccccggcgatctgcgcatcggt
gggttggtgatggacagccgcgcagtgcgcgcgggcgacgctttcgtcgccatcgccggt
ttcggcgcgcacgggctcaagttcgtcgagcaggcgcgcgcgtccggcgcggccgcgatc
ctgttcgagccgccggcgccggacgacctgccggcgccggccgacgccatcgccgtgccc
gggctgcgttcgcgcctgggcgagatgggcgatgccttccatggccgtcccagcgcgtcg
atgcgcgtggtcggcgtcaccggcaccaacggcaagacctcgaccgtgcagctgatcgcg
caggcctggcacctgctcggcctgtcctgcgggactatcggcacgctcggcgccggcctg
tacggacaggtcgtgccgaacggcttcaccaccccgctggtgctgccgttgcacgagctg
ctggccggcatgcgcgacgccggtgcgcaggcggtggcgatggaagtgtcctcgcacgcg
ctcgaccagggccgcgtggccggcgtgcatttcgacgtcggcgtgttcaccaacctcacc
cgcgaccacctggactaccacggcgacatggccagctacggcgcggccaaggcgcggctg
ttcggctgggacgggctgaaggcggctgcgatcaacctcgacgacgagttcggccgcgaa
ctgctcgcgcagctgcccaagcgcgtgcgcggcatcggcctgagctcgcgcggccaggcc
ggcgcgagcgtgcgcgcggaccggctgagcttcgacagccgcggcatcggtttcgacctg
gtcgtcggcggcaaggcccacccggtggcctcgcgcctgctcggccgcttcaacgtcgac
aacctgctggcggtggccggcgcgctgtatgcgttggagcaggagccggcgaccatcgcg
cgggtgctgtcgcagctcgaaccgatccacggccgcatgaaccgtctcggcggcgacggc
cgcctgccgctggtggtgatcgactacgcccacactcccgacgcgctggagcaggcgctg
gcctcgctgcgcgcgcacgcgcaggcgcggctgatctgcgtgttcggctgcggcggcgag
cgcgaccgcggcaagcgcccgcagatggcggcgatcgccgagcacggcgcggacctggcc
atcgtcaccgacgacaacccgcgcggcgaggacggcgacgtcatcgtcgccgacatcctc
gaaggctttcgcgacccgcagcgcgcgctggtgctgcgcgaccgccgcgccgcgatcgag
cgcgcgatcgccgaagccggccccgacgacatcgtgctggtggccggcaagggccacgag
ccttaccaggaaatccacggcgtgcggcatcccttcgacgacaccttgatcgcgcgcgcc
gcgctggaggcgcgggcgccgcacatggatgtgcaagtgccgcgcgcccaggatgggcag
gagcggccatga
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