Lysobacter yananisis: RDV84_16085
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Entry
RDV84_16085 CDS
T09342
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
lya
Lysobacter yananisis
Pathway
lya03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RDV84_16085 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lya03400
]
RDV84_16085 (nth)
Enzymes [BR:
lya01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RDV84_16085 (nth)
DNA repair and recombination proteins [BR:
lya03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RDV84_16085 (nth)
Prokaryotic type
RDV84_16085 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
RecR_HhH
EndIII_4Fe-2S
Motif
Other DBs
NCBI-ProteinID:
WMT05860
LinkDB
All DBs
Position
complement(3837378..3838034)
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AA seq
218 aa
AA seq
DB search
MKPAQIEEMFARLQALNPHPTTELEYTTPFELLVAVALSAQATDVGVNKATRKLFPVANT
PRALVDLGVDGLKPYIATIGLFNTKAQNVIALSQQLLDRHGGEVPRERAALEALPGVGRK
TANVVLNTAFGEPTIAVDTHIFRVSNRTGLAPGKDVLAVEHKLVKVVPDRYLQDAHHWLI
LHGRYVCKARKPDCPHCAIRDLCRFPDQTPGDPEPVAV
NT seq
657 nt
NT seq
+upstream
nt +downstream
nt
atgaagccggcgcagatcgaggagatgttcgcccgcttgcaggcgctcaacccgcatccg
accaccgaactggaatacaccacgccgttcgaattgctggtcgccgtcgcgctctcggcg
caggccaccgacgtcggcgtcaacaaggccacgcgcaagctgttcccggtggcgaacacg
ccgcgggccctggtcgatctcggcgtggacgggctcaagccctacatcgccaccatcggt
ctgttcaacaccaaggcgcagaacgtgatcgcgctgtcgcagcagttgctggaccggcac
ggcggcgaagtgccgcgcgagcgcgccgcgctcgaagcgctgccgggcgtcggccgcaag
accgccaacgtggtgctcaacaccgcgttcggcgagccgaccatcgcggtcgacacgcac
atcttccgggtctccaaccgcaccggactggcgccgggcaaggacgtgctcgcggtcgag
cacaagctggtgaaagtggtgccggatcgctacctgcaagacgctcaccactggctgatc
cttcacggacgttacgtttgcaaggcacgcaaacccgactgcccgcattgcgcgatccgt
gatctttgtcgcttcccggaccagacgccgggcgatccggagcccgtagctgtctga
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