Lysinibacillus sp. CD3-6: FH508_0021125
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Entry
FH508_0021125 CDS
T08381
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lyc
Lysinibacillus sp. CD3-6
Pathway
lyc03030
DNA replication
lyc03410
Base excision repair
lyc03420
Nucleotide excision repair
lyc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FH508_0021125 (ligA)
03410 Base excision repair
FH508_0021125 (ligA)
03420 Nucleotide excision repair
FH508_0021125 (ligA)
03430 Mismatch repair
FH508_0021125 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lyc03032
]
FH508_0021125 (ligA)
03400 DNA repair and recombination proteins [BR:
lyc03400
]
FH508_0021125 (ligA)
Enzymes [BR:
lyc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FH508_0021125 (ligA)
DNA replication proteins [BR:
lyc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FH508_0021125 (ligA)
DNA repair and recombination proteins [BR:
lyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FH508_0021125 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FH508_0021125 (ligA)
MMR (mismatch excision repair)
DNA ligase
FH508_0021125 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FH508_0021125 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
RNA_pol_A_CTD
5_3_exonuc
Nlig-Ia
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UED79855
LinkDB
All DBs
Position
complement(4238041..4240038)
Genome browser
AA seq
665 aa
AA seq
DB search
MNEIEQRIAELNKLLHEYGHAYYVLDNPLVADSVYDQLLHELIALEEANPSLIYPDSPTQ
RVGGAVIEGFKKVTHDYPMLSLSNAFDEAGLREFDRKIRQAIGDHFSYVCELKIDGLAIS
LKYENGVFVQGATRGDGVVGEDITANLKTIRAVPLRLKEPITIEVRGEAYMPKKSFEKLN
TQRAENGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEAYGIDGHGEMLDY
LEGLGFPSNKERQRCASIEEVLTFIETWTENRPNLAYEIDGIVIKVDRFAQQDELGYTAK
SPRWAIAYKFPAEEVVTTLLNIDLTVGRTGVVTPTAILAPVQVAGTTVQRASLHNEDLIR
DKDIRIGDTVIIRKAGDIIPQVVGVLLEQRPEDSIPFEMPANCPVCDSELIRIEGEVALR
CVNPACFAQIAESIKYFVSRNAMNIDGLGEKVVEQLLLADLIHDVSDLYQLTVEQLVELE
RMGEKSATNLVNAIQASKDNSMERLLIGLGIRHVGEKAAKIVSEEFETMEGVMAATEEQL
VAIHEIGDKMASSLVEYFANEDARAVIKRLAEAGVNMTYKGKKVEVVVGDNPFAGKTIVL
TGKLEQLTRNDAKAKIEELGGIVTGSVSKKTDLVIAGSDAGSKLTKAQQLGIEVWNEDDL
IEQLT
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaattgaacagcgcatagcggagttaaataaattattgcatgaatatgggcat
gcgtattacgtgttagataatcctcttgtggcagatagtgtatatgatcaactattacat
gagctcattgcattagaagaggccaatccttcactgatttatcctgattcaccgacacag
cgtgttggcggtgctgtcattgagggatttaaaaaagtgacgcatgattatccgatgcta
agtctgtccaacgcatttgatgaagcgggcttacgtgagtttgaccgaaaaattcgtcaa
gcaatcggtgatcacttttcgtatgtatgtgaactgaaaattgatggtcttgccatttcc
ctaaaatatgagaatggtgtttttgtccaaggcgcaacacgtggtgatggcgtagttggt
gaggatataacagcgaatttaaaaacaattcgtgctgtaccacttcgattaaaagagcca
attacgattgaagtgcgtggcgaagcatatatgcctaaaaagtcatttgaaaaattgaat
acacagcgtgctgaaaacggtgaagaactatttgcgaatcctcgaaatgccgctgctggc
tcattacgtcaattagatccgaaaattgccgcaagtcgtcaactatcaaccttcatttat
gcaattggaggagatggtgaggcgtacggtattgatgggcatggcgagatgctagattat
ttagaaggacttggcttcccatcaaataaagaacgtcaacgctgtgcgtcaatcgaggaa
gtattaacttttatcgaaacatggacagaaaatcgtccgaatttagcctatgaaatagat
ggtatcgtaattaaggtcgatcgttttgcgcagcaagatgaactcggctatacagcaaaa
agtccacgctgggcaattgcctacaaattccccgcagaggaagttgtaacgacattgctt
aatatcgatttaacagtaggtcgaactggcgtcgtgacaccaacggcaattttagcacct
gtacaagtagcgggtacaactgtgcaacgagcatctttacacaatgaagatttaattcgt
gataaagatattcgaattggggatacggtcattatccgaaaagcaggcgacattatccca
caagtagtcggtgtattactagaacaacgcccagaggactcaattccttttgaaatgcca
gcaaattgccctgtttgcgatagtgagcttattcgaattgagggagaagtagccttgcgc
tgtgtaaatccagcatgttttgcacaaattgccgagagcattaaatactttgtctcccgt
aacgccatgaacattgatggacttggtgaaaaggttgttgagcagctattgcttgcagat
ttaattcatgatgtatctgatttatatcagttaacagtggagcaattagttgagctagag
cgtatgggcgaaaaatcagctacaaacttagtgaatgctattcaagcatcgaaggataat
tcgatggaacgtctacttattggtttaggtatacgacatgttggcgagaaggcggcgaag
attgtctcagaagaatttgagacgatggaaggcgtaatggctgcaactgaggagcagctc
gtagccattcatgaaattggcgataaaatggcatcttcactcgttgaatattttgccaat
gaagatgcacgtgccgttattaagcgtcttgctgaagcgggtgtcaatatgacatataaa
ggcaaaaaagtagaggtcgtcgtaggtgacaatccgtttgcagggaagacaatcgtacta
actggtaaacttgagcaattgacacggaacgatgcaaaggcgaaaatagaagagttaggt
ggaattgtcacaggaagtgtcagtaaaaaaacggatcttgttatagctggttcggatgca
ggatctaaactgacaaaggcacaacaattaggcattgaagtttggaacgaggacgaccta
attgagcaactaacttaa
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